Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccctctggtgaaattgttgttcctgctattgtttttgaatcctgccttgtggtagcttatatgtatctaatatggaaatctgcttgttgcaattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATTAGGGACATTCTCAATGATTTGGTTAAATTTTGTGGTTCTTTACCTTTT

Basic information

species Glycine max
transcript GLYMA03G42180.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42180.3 (Glycine max), 3'ss of exon 3
lower sequence: PP1S49_284V6.1 (Physcomitrella patens), 3'ss of exon 3
gtaaccctctggtgaaattgttgttcctgctattgtttttgaatcctgccttgtggtagcttatatgtatctaatatggaaatctgcttgttgcaattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATTAGGGACATTCTCAATGATTTG-GTTAAATTTTGTGGTTCTTTACCTTTT-
       | | || || | ||   | ||  |   |  | |      | | ||    || ||||||| |   |  |||      |    | ||| || | || ||||||||||| | || ||||||||||| || ||||| ||| |||||||||||||| |   | | |||||  ||| |||  || | ||   |    |  | |  
----ttgtgttgtaaattggtgaatgcttgtgcagagtgtttcgttttctttcgtatatcttatattttattcgtatatcttacattatattgtaactttacagGAAGAACCGAAGGAGGAGAGTGATGACGACATGGGCTTCAGCTTGTTTGATTAGAG--TTGCCCAATGGGTTGTGTTGGATCTCGTTCATGCCAAGTTCTGA

upper sequence: GLYMA03G42180.3 (Glycine max), 3'ss of exon 3
lower sequence: PP1S28_131V6.1 (Physcomitrella patens), 3'ss of exon 3
--gtaaccctctggtgaaattgttgttcctgctattgtttttgaatcctgccttgtggtagcttatatgtatctaatatggaaatctgcttgttgcaattct-atagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATTAGGGACATTCTCAATGATTTGGTTAAATTTTGTGGTTCTTTACCTTTT-----
   |   |    | |  |    | |  ||| |   ||| |  ||    | | || |||  || ||  | |   |||| ||      |  |||| || ||  |   |||| || ||  | |||||||| |||||||| ||||||||  ||||||||||||||    ||  ||| |  |    |||||      || |   ||  ||||     
acttcgtcacgagttctatccatggcgcctccgcctgtgtcggatcttttcattctgg--gcatagttatcaataatgtg-----ttctttgtggcgatgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAG----ATGATCATTTGTC-AATTAAACACGACGGATGAATATTTTTTCTCAT

upper sequence: GLYMA03G42180.3 (Glycine max), 3'ss of exon 3
lower sequence: PP1S152_152V6.1 (Physcomitrella patens), 3'ss of exon 3
gtaaccctctggtgaaattgttgttcctgct---attgtttttgaatcctgccttgtggtagcttatatgtatctaatatggaaatctgcttgttgcaattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATTAGGGACATTCTCAATGATTTGGTTAAATTTTGTGGTTCTTTACCTTTT--
       ||||  | |||| | |||   | |   |   | |  | |||||       | |  |   |  ||   |   ||       |   || |   ||| |  |||| || ||| | |||||||||||||| || ||||||||| | |||||||||||  ||  | || ||||  |||  |      | |  |     |   |    
-------tctgaaggaattttagtttgcgatcaaaaactatgcgcatcctcaaacaggatttcccctgagttagtttcatttctcattatctggtttgattttgcagGAGGAGCCGAAGGAAGAGAGTGATGACGACATGGGATTCAGTTTGTTTGATTA--GAATTGCTTAATGGGTTGAGTGGGACCTTTTATATGCCAGTGTCGAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208125226|gb|GD922804.1|GD922804
EST:     GTGGTGCTGCTGCCGCAGCTCCAGCTGCTGAGGAGAAAAAGAAG                         GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
genomic: GTGGTGCTGCTGCCGCAGCTCCAGCTGCTGAGGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
EST: gi|23063891|gb|BU578656.1|BU578656
EST:     GGAGAAAAAGAAG                         GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
genomic: GGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
EST: gi|208169622|gb|GD967345.1|GD967345
EST:     AGGAGAAAAAGAAG                         GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
genomic: AGGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
EST: gi|18039230|gb|BM307524.1|BM307524
EST:     TGCTGCCGCAGCTCCAGCTGCTGAGGAGAAAAAGAAG                         GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
genomic: TGCTGCCGCAGCTCCAGCTGCTGAGGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
EST: gi|193667112|gb|FK612584.1|FK612584
EST:     GGAGAAAAAGAAG                         GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
genomic: GGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
EST: gi|193585777|gb|FK541219.1|FK541219
EST:     GCTCCAGCTGCTGAGGAGAAAAAGAAG                         GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
genomic: GCTCCAGCTGCTGAGGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtggtagcttatatgtatctaatatggaaatctgcttgttgcaattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATTAGGGACATTCTCAATGATTTGGTTAAATTTTGTGGTTCTTTACCTTTT
                   atctaat  putative branch site (score: 3)
           ttatatgtatctaata  TA-rich tract