Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcaaattcaaatacaaattaacatgattttaataattcaattttttttcaaggttatgcattctattctatctgtgacaattatttctttggagtctgaatatccttaaaggtctaaagtatcatatttacaatgcagGCTTGCAATTTGCTTACCAACTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGG

Basic information

species Glycine max
transcript GLYMA03G41050.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G41050.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0036g01130.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtcaaattcaaatacaaattaacatgattttaataattcaattttttttcaaggttatgcattctattctatctgtgacaattatttctttggagtctgaatatccttaaaggtctaaagtatcatatttacaatgcagGCTTGCAATTTGCTTACCAACTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGG
                                  |  ||    ||| ||   |     || ||  |    |   || | ||  |  |   |||    | | ||  | |||  ||   ||| |  ||  || ||| |  |||||| ||   |||||| || || || |||||  |||||||||||||||||| ||| || |||| ||| || || |||||||||||||| || |||||||||||
----------------------------------tgctagga-aatgttagcttggtcttgtgtctgtcttcacatgtttgttatgtgaatctcc--attttg--tttccccaa---tctgagctag-atttttgctgtgcagGATTATCATTTGCCTATCAGCTGTTATATTTGTTGGATGCTACTGGATTCTATTCTCTAGGACTACATGCTCTTGGGATTCATGTGTGTCGAGCTACAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687819|gb|BF595495.1|BF595495
EST:     TCAGAGAATTGTTGGGTTTTGCTACCCGTGGTTACATGCTAGTACTGAGG                         GCTTGCAATTTGCTTACCAACTCTTATACCTGTTGGATGCTACTGGATACT
genomic: TCAGAGAATTGTTGGGTTTTGCTACCCGTGGTTACATGCTAGTACTGAGGgtatgtcaaa ... tacaatgcagGCTTGCAATTTGCTTACCAACTCTTATACCTGTTGGATGCTACTGGATACT
EST: gi|209710153|gb|BW658902.1|BW658902
EST:     TCAGAGAATTGTTGGGTTTTGCTACCCGTGGTTACATGCTAGTACTGAGG                         GCTTGCAATTTGCTTACCAACTCTTATACCTGTTGGATGCTACTGGATACT
genomic: TCAGAGAATTGTTGGGTTTTGCTACCCGTGGTTACATGCTAGTACTGAGGgtatgtcaaa ... tacaatgcagGCTTGCAATTTGCTTACCAACTCTTATACCTGTTGGATGCTACTGGATACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctttggagtctgaatatccttaaaggtctaaagtatcatatttacaatgcagGCTTGCAATTTGCTTACCAACTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGG
                            gtctaaa  putative branch site (score: 3)
                               taaagtatcatattta  TA-rich tract