1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagcaattctctgaatactgttacaacgtagagcatatgcttgaatttttgtttggggtgctctaaattcagtttggaaagtaaactcagttttttggcatgtttggttatgaaaagtatgtttgcttggcgctaccaatgttagctgttgatgaatacattgtcatctttccttcttcagGTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGATTTACCAAAAGGAACTTTTGTATGTGAATATGTAGGAGAAATATTAACCA
species | Glycine max |
transcript | GLYMA03G41020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAG GTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGATEST: gi|18734360|gb|BM528137.1|BM528137
genomic: TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGgtaagcaatt ... ccttcttcagGTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGAT
EST: TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAG GTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAEST: gi|298176786|gb|HO023259.1|HO023259
genomic: TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGgtaagcaatt ... ccttcttcagGTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGA
EST: TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAG GTGTTTTTAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGAT
genomic: TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGgtaagcaatt ... ccttcttcagGTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGAT
ttggcgctaccaatgttagctgttgatgaatacattgtcatctttccttcttcagGTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGATTTACCAAAAGGAACTTTTGTATGTGAATATGTAGGAGAAATATTAACCA
tgttgat putative branch site (score: 4)
cattgtcatctttcct putative PPT
aatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaattctctgaatactgttacaacgtagagcatatgcttgaatttttgtttggggtgctctaaattcagtttggaaagtaaactcagttttttggcatgtttggttatgaaaagtatgtttgcttggcgctaccaatgttagctgttgatgaatacattgtcatctttccttcttcagGTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGATTTACCAAAAGGAACTTTTGTATGTGAATATGTAGGAGAAATATTAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA