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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgatcttaattaacaaaaaagctattatcttaattaattaattaattaatgtgcattgaccgtgaggttgttattttttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTAAATTCCACTTTCGACAACAATCTGCTCTATCTGTTGCTCTTGGGCGTCC

Basic information

species Glycine max
transcript GLYMA03G40760.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40760.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0081g00010.t01 (Vitis vinifera), 3'ss of exon 4
--------------------gttagtgatcttaattaacaaaaaagctattatcttaattaatt--aattaattaatgtgcattgaccgtgaggttgttattttttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAA--ATTTGTAAATTCCACTTTCGACAACAATCTGCTCTATCTGTTGCTCTTGGGCGTCC
                    |  | | ||  | ||||     |     |  || || |  | ||    | | ||||| |    |    |   | ||   ||   |    | |||| |||||||||||||| ||||||||||||||||||||||| ||   ||    |   | | | |   |  | |  | |    | |||  | || |||  |   
gttagtcatatatacttgctgcaactcatgatcattatggttatgttcaaaattttcaccacttttgctgacttaatctcttgtatttgcttgatta--atcaatggcatgcagCCCCAAGAGCAGTGGAGAAGTGCAAGAACAGAAGCTAGAGGCACCCATCCACAGTCTGCCCATCAAAGGAAAGCCAGAAGCAGCTGAGGATCATGGATGG--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593460|gb|DB977147.1|DB977147
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATAGGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|192299772|gb|FG993322.1|FG993322
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATTTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|192305993|gb|FG993625.1|FG993625
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATTTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|26060235|gb|CA803149.1|CA803149
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|254347844|gb|GR854093.1|GR854093
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|58019236|gb|CX705978.1|CX705978
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|151405406|gb|EV275220.1|EV275220
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAG-CAATCGGGCTAG                         CACCA-GAGCAGTGGAAA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAA
EST: gi|37994207|gb|CF805953.1|CF805953
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|37996072|gb|CF807661.1|CF807661
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|254337775|gb|GR845345.1|GR845345
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|192331445|gb|FK022721.1|FK022721
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATTTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|26047583|gb|CA784317.1|CA784317
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|209708631|gb|BW678808.1|BW678808
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|207763941|gb|GD738834.1|GD738834
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaattaattaattaatgtgcattgaccgtgaggttgttattttttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTAAATTCCACTTTCGACAACAATCTGCTCTATCTGTTGCTCTTGGGCGTCC
                     cattgac  putative branch site (score: 3)
                                         ttttttattt  putative PPT
                                   ttgttattttttattt  TA-rich tract