Sequence
atgc intronic sequence ATGC exonic sequencegtaagattgctttctttcccttttctattgaagaagtgttttttttcaggagtggcaagatatcaatcgcattttacatttccagGGGAAGAAACCGGATGCCTTGTATAAAGTGAAGGATCCAGAAGTACGACAATTTGTTGAGAAATGCCTGGCAACGGTGTCTCTAAGGCTCTCTGCTAGGG
Basic information
species | Glycine max |
transcript | GLYMA03G40550.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G40550.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g01660.t01 (Vitis vinifera), 3'ss of exon 5
------gtaagattgctttctttcccttttctattgaagaagtgtttttttt-caggagtggcaagatatcaatcgcattttacatttccagGGGAAGAAACCGGATGCCTTGTATAAAGTGAAGGATCCAGAAGTACGACAATTTGTTGAGAAATGCCTGGCAACGGTGTCTCTAAGGCTCTCTGCTAGGG
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gttagtactcactccctatatctttctctcgttctctccatttgtttgctttgtctctatgtctccacattga-catgccttgttgctttagGGGAAAAAACCAGATGCTTTATATAAAGTGAAGGATCCGGAAGTGCGAGAATTTGTTGAGAAATGCTTGGCTTCTGTGTCTCTGAGGCTCTCCGCTAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18692755|gb|BM521603.1|BM521603EST: CTTATAGCGAATGTAGCCATCCAGCACAAATCTACAAGAAAGTTATTTCA GGGAAGAAACCGGATGCCTTGTATAAAGTGAAGGATCCAGAAGTACGACAA
genomic: CTTATAGCGAATGTAGCCATCCAGCACAAATCTACAAGAAAGTTATTTCAgtaagattgc ... acatttccagGGGAAGAAACCGGATGCCTTGTATAAAGTGAAGGATCCAGAAGTACGACAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagaagtgttttttttcaggagtggcaagatatcaatcgcattttacatttccagGGGAAGAAACCGGATGCCTTGTATAAAGTGAAGGATCCAGAAGTACGACAATTTGTTGAGAAATGCCTGGCAACGGTGTCTCTAAGGCTCTCTGCTAGGG
catttcc CT-rich tract
attttacattt TA-rich tract