Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaagttataacccacaaaacatgacaccttaacaatccataacacatgcataacagcataagtacaatcgaatatgtaaatgctattttattcttgcagGTTAATGATGCTGTTCTTGTTGGTGATAGTACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAG

Basic information

species Glycine max
transcript GLYMA03G40440.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40440.4 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 3
----ttaagttataacccacaaaacatgacaccttaacaatccataacacatgcataacagcataagtacaatcgaatatgtaaatgctatt-ttattcttgcagGTTAATGATGCTGTTCTTGTTGGTGATAGTACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAG
    |||  |   |      |   |||   |  |  |   |  ||    | ||||||    |||   ||  || |||| || ||     ||| ||  |  ||||||||||||||||||||||||  ||||| | |||||| ||||| |||||||||||||| ||||| |||
atctttatatgggattgtttagttcattgaat-tccattttttattgtgc-tgcatacatacat---tattattgaatttgaaaggaaaattgttggttgtgcagGTTAATGATGCTGTTCTTGCAGGTGACAATACACTCGTTTCCTGTTCTTCAGATACTACCCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712994|gb|BW684288.1|BW684288
EST:     GTGTGGATAGAGCAACATGCTTGGCTACTTTTGAATCTCATGTCGATTGG                         GTTAATGATGCTGTTCTTGTTGGTGATAGTACACTTGTTTCTTGTTCTTCA
genomic: GTGTGGATAGAGCAACATGCTTGGCTACTTTTGAATCTCATGTCGATTGGgtaatcctta ... attcttgcagGTTAATGATGCTGTTCTTGTTGGTGATAGTACACTTGTTTCTTGTTCTTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgcataacagcataagtacaatcgaatatgtaaatgctattttattcttgcagGTTAATGATGCTGTTCTTGTTGGTGATAGTACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAG
   gcataac  putative branch site (score: 3)
                                         ttttattctt  putative PPT
                          aatatgtaaatgctat  TA-rich tract