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gtgagttcagagctgatccctataggtggtatatatatttaattattttttttattatataatatatagtttttgattggggtgtatttggttatgtttcagGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCAC
species | Glycine max |
transcript | GLYMA03G40240.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGG GGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAEST: gi|208216398|gb|GE011672.1|GE011672
genomic: GGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGgtgagttcag ... tatgtttcagGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
EST: GGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGG GGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAEST: gi|208303651|gb|GE107752.1|GE107752
genomic: GGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGgtgagttcag ... tatgtttcagGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
EST: GGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGG GGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAEST: gi|15286811|gb|BI470702.1|BI470702
genomic: GGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGgtgagttcag ... tatgtttcagGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
EST: AGACAAACCATAGG GGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
genomic: AGACAAACCATAGGgtgagttcag ... tatgtttcagGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
ttttttattatataatatatagtttttgattggggtgtatttggttatgtttcagGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCAC
ttttgat putative branch site (score: 4)
tattatataatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcagagctgatccctataggtggtatatatatttaattattttttttattatataatatatagtttttgattggggtgtatttggttatgtttcagGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA