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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatccttcatctgtcttgcgcctattccaagctataaattgtgtgctctttattgcaataatgacttataattccctcttactcattttacttttcttccagATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACG

Basic information

species Glycine max
transcript GLYMA03G40220.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 3
gtaagt-tatccttcatctgtcttgcgcctattccaagctataaattgtgtgctctttattgcaataatgacttataattccctc---ttactcat---tttacttttct-----tccagATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACG
|||||  |    |  |||||| |  |   |  | ||   | || ||| | | || || | | | | |      | ||      ||   | | ||||   ||| ||  | |     |||||||||||||||||||||||||||||||||||| | |   | ||    | |
gtaagcatgctatatatctgtgt-acattt-ctgcattatgtagatt-tattctgttcactactagacctctctttagcgtaatcggttcaatcatgtgtttgctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 3'ss of exon 1
gta-agttatccttcatctgtcttgcgcctattccaagctataaattgtgtgctctttattgcaataatgacttataattccctcttactcattttacttttcttccagATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACG
||| | || | | | || |   ||    || |||    ||| |  | ||   |   |  ||    | ||   ||  |        || ||||||    | |  |||||||||||| ||||||||||||||||||||||||   |   | ||    | |
gtacatttcttcattatgtagatttgttctgttc---actacatctggtagacctctctttagtgtcattggttcaatcatgtgtttgctcatt----tgtgtttccagATTTCACGTGTATGATGTTGATACAAAATATTTCAATTTACCTGTGAAG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 3'ss of exon 3
----------------gtaagttatccttcatctgtct-tgcgcctattccaa--gctataaattgtgtgctctttattgcaataatgacttataattccctcttactcattttacttttcttccagATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACG
                   |  ||   ||| ||  | | |     |||||      ||| |  | ||   |   |  ||    | ||   ||  |        ||  ||||  |  | || ||||||||||||||||||||||||||||||||||||| | |   | ||    | |
gtaagcatgttatatatcgatgtacatttcttcattatgtagatttattctgtttactacatctggtagacctctctttagtgtcattggttcaatcatgtgtttgttcat--tggtgtttttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 3'ss of exon 1
gtaagt-tatccttcatctgtcttgcgcctattccaagctataaattgtgtgctctttattgcaataatgacttataattccctc---ttactcat---tttacttttct-----tccagATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACG
|||||  |    |  |||||| |  |   |  | ||   | || ||| | | || || | | | | |      | ||      ||   | | ||||   ||| ||  | |     |||||||||||||||||||| ||||||||||||||| | |   | ||    | |
gtaagcatgctatatatctgtgt-acattt-ctgcattatgtagatt-tattctgttcactactagacctctctttagcgtaatcggttcaatcatgtgtttgctcatttgtgtttccagATTTCATGTGTATGACGTTGATACAAAATATTACAATTTACCTGTGAAG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 4
----gtaagttatccttca-tctgtcttgcgcctattccaagctataaattgtgtgctctttattgcaataatgactta--taattccctcttac-tcattttactttt-cttccagATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACG
    | | | |||   ||| | |   || |  |  |    || | ||   |||   ||  |           |  | ||     |||  || |   |  | | | || |  ||||||||||||||||||||||||||||||||||||| | |   | ||    | |
gtaagcatgctatatatcagtgtacatttctgcattatgtagatttattctgttcactactagacctctctttagcgtaatcggttcaatcatgtgttttctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttattgcaataatgacttataattccctcttactcattttacttttcttccagATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACG
                            ctcttac  putative branch site (score: 3)
                        ttccctcttactcatt  CT-rich tract
         aataatgacttataat  TA-rich tract