1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgcatttcttttggatccttggaaaagcaaaatgggtttggagttagttggcaaagaaaagccctcaatattaataaattatgttttcatttgactgtagACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCTGGTGATCTGGTTGGTGTTAACAAAGATAGTTACTTAGTCTTGGATGCCC
species | Glycine max |
transcript | GLYMA03G39500.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAG ACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCTEST: gi|23727048|gb|BU761539.1|BU761539
genomic: ACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAGgtgacaaagc ... ttgactgtagACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCT
EST: ACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAG ACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCTEST: gi|209718165|gb|BW657811.1|BW657811
genomic: ACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAGgtgacaaagc ... ttgactgtagACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCT
EST: ACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAG ACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCTEST: gi|298168340|gb|HO014515.1|HO014515
genomic: ACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAGgtgacaaagc ... ttgactgtagACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCT
EST: ACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAG ACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCTEST: gi|17400340|gb|BM177122.1|BM177122
genomic: ACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAGgtgacaaagc ... ttgactgtagACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCT
EST: ACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAG ACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCT
genomic: ACTCCCAAAGGAAAGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAGgtgacaaagc ... ttgactgtagACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCT
agttggcaaagaaaagccctcaatattaataaattatgttttcatttgactgtagACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCTGGTGATCTGGTTGGTGTTAACAAAGATAGTTACTTAGTCTTGGATGCCC
ttttcattt CT-rich tract
tcaatattaataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatttcttttggatccttggaaaagcaaaatgggtttggagttagttggcaaagaaaagccctcaatattaataaattatgttttcatttgactgtagACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCTGGTGATCTGGTTGGTGTTAACAAAGATAGTTACTTAGTCTTGGATGCCC
-gcatttc
- - - - - - - - ccttgga
- - - - - - - - - - - - aagcaaaa
- - - - - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agccctc