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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaacaaaatattatttgcttgcctcagacttctgtgcatgattaagctgatgttttcatttcatatgcagGGGAAACTTCTGGAACAACAGCTACATTTGTTTTGGTTGATGGATGGACTGTCACTGTTGCATCTGTTGGGGATTCCCGCTGCATATCAGATACTCAGGG

Basic information

species Glycine max
transcript GLYMA03G39260.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39260.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G09160.2 (Arabidopsis thaliana), 3'ss of exon 3
--------------gtacaaacaaaatattatttgcttgcc---tcagacttctgtgcatgattaagctgatgttttc-atttcatatgcagGGGAAACTTCTGGAACAACAGCTACATTTGTTTTGGTTGATGGATGGACTGTCACTGTTGCATCTGTTGGGGATTCCCGCTGCATATCAGATACTCAGGG
               ||      |||   | ||||||| |       |  ||    ||||| |  | | |||    ||  ||     | ||||||||||||| |||||||| |  || |||||| |  ||||||| |||||| | |||||||| |||||||| || || ||||||||||  || || || ||
gtcttagcttatgcttattttttaaaggctttttgctttctattcttgtttttcaagcatgctctaaccgataagatctgttgtgcttacagGGGAAACTTCAGGAACAACCGTGACTTTTGTTATAATTGATGGTTGGACTATTACTGTTGCTTCTGTTGGTGACTCGCGCTGCATATTGGACACCCAAGG

upper sequence: GLYMA03G39260.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0060g01580.t01 (Vitis vinifera), 3'ss of exon 3
----------------gtacaaacaaaatattatttgcttgcctcagacttctgtgcatgattaagctgatgttttcatttcatatgcagGGGAAACTTCTGGAACAACAGCTACATTTGTTTTGGTTGATGGATGGACTGTCACTGTTGCATCTGTTGGGGATTCCCGCTGCATATCAGATACTCAGGG
                 ||    ||  || |      ||||   || |  | | ||  |  |||   | |   ||| || | |    |||| ||||||||||| || ||||  ||||||||| || |||| || ||||| || |||||||||||||| |||||||| || |||||||  || || |||||
gcaagaacctatttccctaatttcagcatctctaagccttgttgcatatatttttgtgttcttatctttaatatttgatataaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGGTGACTGTTGCATCTGTAGGGGATTCTCGATGCATATTGGACACACAGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgcctcagacttctgtgcatgattaagctgatgttttcatttcatatgcagGGGAAACTTCTGGAACAACAGCTACATTTGTTTTGGTTGATGGATGGACTGTCACTGTTGCATCTGTTGGGGATTCCCGCTGCATATCAGATACTCAGGG
                             agctgat  putative branch site (score: 4)
                                     ttttcatttc  CT-rich tract
                                     ttttcatttcatat  TA-rich tract