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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcactttctttgctcatttcctttactttcacactttttttttaccatagaaaatgttagaaatattcctgttcttaacttgtagctgttcattgcatctgatatccacatttgactgaattctctagGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG

Basic information

species Glycine max
transcript GLYMA03G39130.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040454|gb|BM308748.1|BM308748
EST:     GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAA                         GTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA
genomic: GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAAgtgagcactt ... aattctctagGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA
EST: gi|192297309|gb|FG992403.1|FG992403
EST:     GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAA                         GTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA
genomic: GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAAgtgagcactt ... aattctctagGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA
EST: gi|298165334|gb|HO011383.1|HO011383
EST:     GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAA                         GTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCG
genomic: GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAAgtgagcactt ... aattctctagGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCG
EST: gi|207682534|gb|GD664863.1|GD664863
EST:     GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAA                         GTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA
genomic: GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAAgtgagcactt ... aattctctagGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA
EST: gi|298196930|gb|HO041673.1|HO041673
EST:     GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAA                         GTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA
genomic: GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAAgtgagcactt ... aattctctagGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA
EST: gi|18041310|gb|BM309604.1|BM309604
EST:     GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAA                         GTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA
genomic: GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAAgtgagcactt ... aattctctagGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA
EST: gi|4436994|gb|AI522859.1|AI522859
EST:     GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAA                         GTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA
genomic: GGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAAgtgagcactt ... aattctctagGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaacttgtagctgttcattgcatctgatatccacatttgactgaattctctagGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG
                                               ttctct  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcactttctttgctcatttcctttactttcacactttttttttaccatagaaaatgttagaaatattcctgttcttaacttgtagctgttcattgcatctgatatccacatttgactgaattctctagGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC