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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctaattgtaaatgtgaacaactaaaaattggactaaccttcttgcaatccatgatgtgaatgcatggcttttcatctttgttactcttatacccggaacatttacttagtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGTCTCTCAGCAGAGGGATTTGATGTTGTTTATGACATAAATG

Basic information

species Glycine max
transcript GLYMA03G38930.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38930.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G09340.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgctaattgtaaatgtgaacaactaaaaattggactaaccttcttgcaatccatgatgtgaatg-catggcttttcatctttgttactcttatacccggaacatttacttagtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGTCTCTCAGCAGAGGGATTTGATGTTGTTTATGACATAAATG
||||   |    |   ||| || |||||  |  || ||  ||     |  |||  |   |    |||  | |   ||  ||  ||   | ||  |||     || |  |  ||  | | |   ||||      | ||||  | || |||||||||||||| |||||||  |||||||| || || ||||| |||||||| || || |||||||||||||| || || |
gtattacatgaatccttgtaaaaaactagta--tgcac--actcaaatataatatacatttcagatgataggaacttggatgattaggattccaata----aaataaatgatttttctcggcctttt------ctagATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG

upper sequence: GLYMA03G38930.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0060g00820.t01 (Vitis vinifera), 3'ss of exon 3
gtatgctaattgtaaatgtgaacaactaaaaattggactaaccttcttgcaatccatgatgtgaatgcatgg-cttttcatctttgttactcttatacccggaacat-----ttacttagtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGTCTCTCAGCAGAGGGATTTGATGTTGTTTATGACATAAATG
    |   ||| |  |  |   | ||   || |   |||  ||||| | |      | ||  | || |||   || || |    ||     | | | ||  |  |||     ||  ||  ||   | |||||  |||   || | |||||||||||||||||||| |||||||| || ||||| ||| |||||||  |||| || || ||||||||||| || || |||||||
----gtatattatgtaccttgtctacatgaattctcact--ccttcatccccggtttcattagtattcattctctcttgaggaatgaccagcatgttccaagtgcatgaaagttgtttcttgattttttttttctttggtagGTTTTGCATTTGAAAGGAGACAGAAAGGACTTTGAATTTGTGAAAACCAGTCTTGCAGCTGAAGGCTTTGATGTTGTCTACGATATAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321048|gb|FK012416.1|FK012416
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120534298|gb|EH262431.1|EH262431
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120534123|gb|EH262256.1|EH262256
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120534506|gb|EH262639.1|EH262639
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209697177|gb|BW672942.1|BW672942
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|10232858|gb|BE801746.1|BE801746
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213606521|gb|DB971317.1|DB971317
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|19271086|gb|BM887342.1|BM887342
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120496123|gb|EH224290.1|EH224290
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213608598|gb|DB967101.1|DB967101
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120531123|gb|EH259256.1|EH259256
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213617909|gb|DB967299.1|DB967299
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|15287169|gb|BI471060.1|BI471060
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAAGAGACAGGAAAGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209708025|gb|BW657080.1|BW657080
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|17518618|gb|BM187660.1|BM187660
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213589761|gb|DB955456.1|DB955456
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|13562783|gb|BG551003.1|BG551003
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209721697|gb|BW682538.1|BW682538
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209701640|gb|BW673126.1|BW673126
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213598124|gb|DB964155.1|DB964155
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|6667229|gb|AW278688.1|AW278688
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGAC
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGAC
EST: gi|209715536|gb|BW682189.1|BW682189
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213602138|gb|DB962631.1|DB962631
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|151403281|gb|EV273091.1|EV273091
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213594012|gb|DB961928.1|DB961928
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120531139|gb|EH259272.1|EH259272
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120530457|gb|EH258590.1|EH258590
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|15199948|gb|BI424091.1|BI424091
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209723821|gb|BW682958.1|BW682958
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209709384|gb|BW668340.1|BW668340
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213601152|gb|DB964659.1|DB964659
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209709945|gb|BW676517.1|BW676517
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213614000|gb|DB960965.1|DB960965
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209728486|gb|BW663478.1|BW663478
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209718791|gb|BW671992.1|BW671992
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|13252610|gb|BG363513.1|BG363513
EST:     GCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: GCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|11413480|gb|BF425491.1|BF425491
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|11413168|gb|BF425179.1|BF425179
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213607233|gb|DB965119.1|DB965119
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|10232367|gb|BE801255.1|BE801255
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|20811439|gb|BQ295917.1|BQ295917
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209715908|gb|BW650921.1|BW650921
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|6134475|gb|AW132868.1|AW132868
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|5058545|gb|AI737021.1|AI737021
EST:     GCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: GCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213589232|gb|DB957764.1|DB957764
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209721137|gb|BW665694.1|BW665694
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttactcttatacccggaacatttacttagtgtagtatttttaatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGTCTCTCAGCAGAGGGATTTGATGTTGTTTATGACATAAATG
                                         ttttaat  putative branch site (score: 3)
                                               tttccc  CT-rich tract
                       atttacttagtgtagt  TA-rich tract