1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tctacatatttactttaaccatatttctcaattcattttctccctttcttaaatttgtttgtctctataacaatagaacatgttttttaaaatatttcagACTATAAGCTATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAA
species | Glycine max |
transcript | GLYMA03G38850.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTEST: gi|192296806|gb|FG993104.1|FG993104
genomic: GACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtgttccttc ... aatatttcagACTATAAGCTATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTT
EST: GACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTEST: gi|298174237|gb|HO017573.1|HO017573
genomic: GACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtgttccttc ... aatatttcagACTATAAGCTATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTT
EST: GACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATACGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTEST: gi|151410500|gb|EV280315.1|EV280315
genomic: GACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtgttccttc ... aatatttcagACTATAAGCTATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTT
EST: GACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTT
genomic: GACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtgttccttc ... aatatttcagACTATAAGCTATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTT
ttcttaaatttgtttgtctctataacaatagaacatgttttttaaaatatttcagACTATAAGCTATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAA
ctataac putative branch site (score: 3)
tctataacaatagaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctacatatttactttaaccatatttctcaattcattttctccctttcttaaatttgtttgtctctataacaatagaacatgttttttaaaatatttcagACTATAAGCTATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA