1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttttctctttaccttacgcatgcttgctttattcacttctggagattacaagatatgcttactcaagtcttgtgtgttctcttttttgcgtatattttcttgtgtgcacagATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAG
species | Glycine max |
transcript | GLYMA03G38430.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAACTAGCATTCACAGGGTTGTTGAGCAATAAAGCTGAAGAAAACCCTG ATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTTEST: gi|5666588|gb|AI930624.1|AI930624
genomic: GCAACTAGCATTCACAGGGTTGTTGAGCAATAAAGCTGAAGAAAACCCTGgtttttctct ... gtgtgcacagATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTT
EST: GCAACTAGCATTCACAGGGTTGTTGAGCAATAAAGCTGAAGAAAACCCTG ATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTTEST: gi|8283845|gb|BE021404.1|BE021404
genomic: GCAACTAGCATTCACAGGGTTGTTGAGCAATAAAGCTGAAGAAAACCCTGgtttttctct ... gtgtgcacagATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTT
EST: GCAACTAGCATTCACAGGGTTGTTGAGCAATAAAGCTGAAGAAAACCCTG ATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGGGCATCTTEST: gi|213602988|gb|DB958576.1|DB958576
genomic: GCAACTAGCATTCACAGGGTTGTTGAGCAATAAAGCTGAAGAAAACCCTGgtttttctct ... gtgtgcacagATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTT
EST: GCAACTAGCATTCACAGGGTTGTTGAGCAATAAAGCTGAAGAAAACCCTG ATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTT
genomic: GCAACTAGCATTCACAGGGTTGTTGAGCAATAAAGCTGAAGAAAACCCTGgtttttctct ... gtgtgcacagATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTT
gcttactcaagtcttgtgtgttctcttttttgcgtatattttcttgtgtgcacagATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAG
tgcttac putative branch site (score: 2)
ttttcttgt putative PPT
tatattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttctctttaccttacgcatgcttgctttattcacttctggagattacaagatatgcttactcaagtcttgtgtgttctcttttttgcgtatattttcttgtgtgcacagATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT