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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttgcttttacgatcccttgcttgttttttgttgtcttgtaatttggttatgatggaaaaggcttgatttaaattttggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG

Basic information

species Glycine max
transcript GLYMA03G37170.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37170.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 3'ss of exon 3
-gtaatgttgcttttacgatcccttgcttgttttttgttgtcttg-taatttggtt-atgatggaaaaggcttgatttaaattt-----tggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG
 | | |||   || |    |   |   ||| ||    |||  ||| |  ||| |||  ||||| |    | ||  |     |||     ||  | || |||| || ||||  |||||||||||||| ||||| ||||| || || || || |||||||| ||||| || |||||||||
cgaattgtgtgttctcttttgggtcatttggttccaattggtttgatcgtttagtttgtgatgaatgctgtttcctcattgtttatggttgtcattgcagGATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG

upper sequence: GLYMA03G37170.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G27720.1 (Arabidopsis thaliana), 3'ss of exon 4
---------------gtaatgttgcttttacgatcccttgcttgttttttgttgtcttgtaatttggttatgatggaaaaggcttgatttaaattttggtaa-tgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG
                  |||||| |   |  || | ||| ||    || ||     || ||||| ||   | ||  |      |  |||     ||| | | | ||||||||||||||||||||||||||||| ||||| || || || || || |||||||||||||||||||| || ||||||
gttatcttatgttttcatatgttgatacaaatatactttgtttagacttcgtga---tgaaattttgtgtagctgacactcatatattttgctgcttgattactctagGACGGAGATAGATTTTGGAGGATGCCGGAATGTTATATCCGTGGTAACACAATCAAGTACCTTCGAGTTCCGGATGAG

upper sequence: GLYMA03G37170.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 3'ss of exon 3
------------------gtaatgttgcttttacgatcccttgcttgttttttgttgtcttgtaatttggttatgatggaaaaggcttgatttaaattttggt---aatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG
                    |||  || | |||   | | ||  ||  ||||| |  |    |||  || | ||  |     |  | || |   |||     |   ||||||||| |||||||| |||||||| ||||| ||||||||||| || || |||||||| ||||| ||  |||| ||||| |||
gtatggtatttctttcaatcaattatg-tcttatttttctttaatttatttttataatgacttaaaatgatcatcttctgtgattcatggtcacaatgggaattaaaatgtagGATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAG

upper sequence: GLYMA03G37170.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S36_327V6.2 (Physcomitrella patens), 3'ss of exon 2
--------------------------------------------------------gtaatgttgcttttacgatcccttgcttgttttttg--ttgtcttgtaatttggttatgatggaaaaggcttgatttaa--------attttggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG
                                                            || || ||      |   ||||   |   ||   |||  || |  || | || | || ||      ||| ||| |        || | || | ||||||| || ||  | || ||||||||||||||||||||||| ||||| ||||| || || ||  | || || |||||||||
gtgattatttttgctaccattatctattagggttttcaaagtgatctgcctcgtcccagctgctggttcatatttatattgcagatgaattaatttgagttattcttcgattgttattgattccttttggttttataatggatatgtgggcattgtagGATGGTGACCGGTTCTGGAGGATGCCTGAATGCTACATTCGAGGAAATACTATAAAATATTTGCGGGTTCCTGATGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298181980|gb|HO026155.1|HO026155
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATCTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|22541271|gb|BU091114.1|BU091114
EST:     GCGACACATGGAT-A-CATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|4306331|gb|AI443889.1|AI443889
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|298177576|gb|HO027243.1|HO027243
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|15285536|gb|BI469427.1|BI469427
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|20449577|gb|BQ253701.1|BQ253701
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|298188838|gb|HO035531.1|HO035531
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|298167205|gb|HO010644.1|HO010644
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|15287452|gb|BI471343.1|BI471343
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|20449634|gb|BQ253758.1|BQ253758
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|6227965|gb|AW156627.1|AW156627
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|298165378|gb|HO011427.1|HO011427
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|12773301|gb|BG238228.1|BG238228
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|298181583|gb|HO025758.1|HO025758
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|298169719|gb|HO021079.1|HO021079
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTCGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|298190031|gb|HO032152.1|HO032152
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|298180399|gb|HO025600.1|HO025600
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|298195412|gb|HO039243.1|HO039243
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|6724523|gb|AW308922.1|AW308922
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|208176841|gb|GD977690.1|GD977690
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
EST: gi|24206235|gb|BU965488.1|BU965488
EST:     GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA                         GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA
genomic: GCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgc ... ggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttgtaatttggttatgatggaaaaggcttgatttaaattttggtaatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG
                             gcttgat  putative branch site (score: 5)
                                  atttaaattttggtaa  TA-rich tract