Sequence
atgc intronic sequence ATGC exonic sequencegtatgtgcattatgtttgactcacaactcgtattgttttggatgagtttcaacgttttcggaatctcaagtgtttgtactttgttcgtaagGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTCGTTAGCATTAAG
Basic information
species | Glycine max |
transcript | GLYMA03G36910.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G36910.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G358618_T01 (Zea mays), 3'ss of exon 2
-----------------gtatgtgcattatgtttgactcacaactcgtattgttttggatgagtttca-acgttttcggaatctcaagtgtttgt--actttgttcgt-----------aagGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTCGTTAGCATTAAG
| | | ||| || | || | | | || | | || ||||| | | | ||| | ||| | || || | |||||||||||| |||||||| ||||| || ||| |||| | || || ||||||||||| |||||||| |||||||| |||
gtgagtttctgttatttctttcatcgatattttatattcttgccatctgtgacctttactatgcaccatacgttcgcactaacgtaagcttctgttcatttggtctgggactgaattcgaagGTGTCATGTGATGGAGGTGGAGTCCTTTGAGAATGAGGAAGTGGCAAAGTTGCTGAATGATTGGTTTGTTAGCATCAAG
upper sequence: GLYMA03G36910.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G358618_T02 (Zea mays), 3'ss of exon 2
--gtatgtgcattatgtttg--actcacaactcgtattgttttggatgagttt----caacgt---tttcggaatctcaagtgtttgtactttgttcgtaagGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTCGTTAGCATTAAG
|| | ||| ||| | || || | | || ||| ||||| ||| | | || | | ||| |||| |||||||||||| |||||||| ||||| || ||| |||| | || || ||||||||||| |||||||| |||||||| |||
atcgatattttatattcttgccatctgtgacctttactatgcaccatacgttcgcactaacgtaagcttctgttcatttggt-ctgggactgaattcg-aagGTGTCATGTGATGGAGGTGGAGTCCTTTGAGAATGAGGAAGTGGCAAAGTTGCTGAATGATTGGTTTGTTAGCATCAAG
upper sequence: GLYMA03G36910.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 3
-----------------gtatg---tgcattatgtttgactcacaactcgtattgttttggatgagtttcaacgttttcggaatctcaagtgtttgtactttgttcgtaagGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTCGTTAGCATTAAG
| || ||| | | || | | | | | |||| | | || | ||| | | || || | || || ||||||||||| |||||||| |||||||| ||| |||||| |||||| || ||||| || |||||||| ||||| ||||||
gtaagaatttttgctccatgtgaattgcttagttttggttttttgttttttggtcttttaaactctgtgcagcattt-catggtgagtgatgggtggaaaccattggttagGTGTCATGTGATGGAGGTGGAGTCTTTTGAGAATGAAGGGGTTGCAAAATTGCTCAATGATTGGTTTGTTAGTATTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttggatgagtttcaacgttttcggaatctcaagtgtttgtactttgttcgtaagGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTCGTTAGCATTAAG
ctttgttc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtgcattatgtttgactcacaactcgtattgttttggatgagtttcaacgttttcggaatctcaagtgtttgtactttgttcgtaagGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTCGTTAGCATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC