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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaaatgtttttattatttaatgaaaattttgttcagctgataaatttctttgcatgtgcaagaattgctttgtgctatattaaggtcatgccttgataagtgtttttttgtggcccttgaatctagAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTT

Basic information

species Glycine max
transcript GLYMA03G36650.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G36650.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------------gtataaaatgtttttattatttaatgaaaattttgttcagctgataaatttctt-------tgcatgtgcaagaattg-ctttgtgctatattaaggtc----atgccttgataagtgtttttttgtggcccttga-atctagAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTT
                                    |    ||| || ||  | |||      |     |  ||| |  ||   ||  |       ||| | || ||    || | |||||||||||||  ||     ||   |  |||| |   ||||||    |||||  ||| ||| |||||||| ||  |||| |||||||| |||||||||||||||| |||| | ||| || | || || || |||||||||||||| || ||||||||| |
gtgtaatatattttcattgtttaattacatatttcatccttaatcttgttcctttttggatgtagcagcgc-cagttcttattctttatctaatgctgcttttgtaaatgatgtccttgtgctatattatagttttatatatttcaataaataactttttgccatccttgctatccagAGCACAAACTTTTTGTTGGTATGCTTCCGAAGAATGTTTCTGAAGCTGAAGTTTCTTCTTTATTTTCTAAATATGGAACTATAAAAGACTTACAAATTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326562|gb|FK017279.1|FK017279
EST:     ATCTAGTCCATTACAAGTGAAGTATGCAGATGGGGAGTTGGAAAGATTAG                         AACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAA
genomic: ATCTAGTCCATTACAAGTGAAGTATGCAGATGGGGAGTTGGAAAGATTAGgtataaaatg ... ttgaatctagAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAA
EST: gi|19348677|gb|BM893209.1|BM893209
EST:     ATCTAGTCCATTACAAGTGAAGTATGCAGATGGGGAGTTGGAAAGATTAG                         AACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAA
genomic: ATCTAGTCCATTACAAGTGAAGTATGCAGATGGGGAGTTGGAAAGATTAGgtataaaatg ... ttgaatctagAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAA
EST: gi|298175595|gb|HO018306.1|HO018306
EST:     ATCTAGTCCATTACAAGTGAAGTATGCAGATGGGGAGTTGGAAAGATTAG                         AACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAA
genomic: ATCTAGTCCATTACAAGTGAAGTATGCAGATGGGGAGTTGGAAAGATTAGgtataaaatg ... ttgaatctagAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAA
EST: gi|298167101|gb|HO010540.1|HO010540
EST:     ATCTAGTCCATTACAAGTGAAGTATGCAGATGGGGAGTTGGAAAGATTAG                         AACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAA
genomic: ATCTAGTCCATTACAAGTGAAGTATGCAGATGGGGAGTTGGAAAGATTAGgtataaaatg ... ttgaatctagAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctatattaaggtcatgccttgataagtgtttttttgtggcccttgaatctagAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTT
                   ccttgat  putative branch site (score: 5)
                                          ccctt  putative PPT
                        ataagtgttttttt  TA-rich tract