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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattcatttttatgcatattttagattttcctatatttacagttttgatgtaaagtctatgtctaatagttaaactttaatctacataagataattcttttgtatgtgaatgccaaattctcattttcatgtctgttctttaatttttagGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCGGTACGAGAGAATGACAAGGGGGCGTCGTCGTGAGCACTACCAATGGAAC

Basic information

species Glycine max
transcript GLYMA03G34050.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34050.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g01360.t01 (Vitis vinifera), 3'ss of exon 3
-----gtaaaattcatttttatgcatattttagattttcctatatttacagttttg----atgtaaagtctatgtctaatagttaaactttaatcta--cataagataattc-----ttttgtatgtgaatgccaaattctcattttcatgtc--tgttctttaatttttagGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCGGTACGAGAGAATGACAAGGGGGCGTCGTCGTGAGCACTACCAATGGAAC
        | | |  || || || || |  | | || | || | |  |   | | |    |  ||||   | || ||  |     || |||  |  |  |||      |||      ||||||||     | |  |   |  | ||| || ||  |||| |||  | |  || || || || ||  | ||| | || |||||  |||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||||||||||| 
gtactaagatactagttcttctgtatttcattgcttctgctttctgaatgatgtagtgtcaactaaaaaatttgactgttcaaagaattttggttcattcatttatctatttataatttttgtatccaggtacagatgccagaatttgatctccatgtttttttctgtccagAAAATCTGTATCTCTTCCATTGAAATGGTTTGCTGTAGGACAGTGTTGGCGTTATGAGAGAATGACAAGGGGACGCCGTCGTGAGCACTACCAATGGAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21675349|gb|BQ627700.1|BQ627700
EST:     TTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGG                         GAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG
genomic: TTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGgtaaaattca ... taatttttagGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG
EST: gi|37994195|gb|CF805941.1|CF805941
EST:     TTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGG                         GAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG
genomic: TTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGgtaaaattca ... taatttttagGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG
EST: gi|6951687|gb|AW423755.1|AW423755
EST:     TGATCCAGAAAAG                         GAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG
genomic: TGATCCAGAAAGGgtaaaattca ... taatttttagGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttgtatgtgaatgccaaattctcattttcatgtctgttctttaatttttagGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCGGTACGAGAGAATGACAAGGGGGCGTCGTCGTGAGCACTACCAATGGAAC
                                          ctttaat  putative branch site (score: 4)
                                    tctgttcttt  CT-rich tract
                                      tgttctttaattttta  TA-rich tract