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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgcactaaatttggagtattggatttcagataattgctttaatatttaatatcataaacaaacttaataaaaccagcagtggaagtgcatgtttcataatgacagctcctacattttttttattgtgtgatggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA

Basic information

species Glycine max
transcript GLYMA03G33910.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298167297|gb|HO010736.1|HO010736
EST:     GTTTGAAGAATTGGTTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTTTGAAGAATTGGTTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgatggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|298190129|gb|HO032250.1|HO032250
EST:     GTTTGAAGAATTGGTTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTTTGAAGAATTGGTTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgatggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|7684823|gb|AW755471.1|AW755471
EST:     GTTTGAAGAATTGGTTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTTTGAAGAATTGGTTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgatggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|254342530|gb|GR858692.1|GR858692
EST:     GTTTGAAGAATTGGTTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTTTGAAGAATTGGTTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgatggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|298189605|gb|HO038008.1|HO038008
EST:     GTTTGAAGAATTGGTTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTTTGAAGAATTGGTTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgatggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtgcatgtttcataatgacagctcctacattttttttattgtgtgatggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
                            tacattttttttattg  TA-rich tract