1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gctcaatttgtagttctgcactactttatgttgattctcaatctttatctaaatataaatgttgaaataattgttgcattcttttttctttctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAATCCGAGATCAGGGTTTTGAAGTTGATTACTTAAATATTGGTGGAGGAC
species | Glycine max |
transcript | GLYMA03G33830.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|208057882|gb|GD856443.1|GD856443
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: GGGGCTCACTTGTCATCTTGGTTCAACAATTACCAAG GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|193572576|gb|FK528235.1|FK528235
genomic: GGGGCCCAC-TGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCGCTGTCATCTTGGTTCAACAATTACCAAG GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|15286766|gb|BI470657.1|BI470657
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|193355263|gb|FK321780.1|FK321780
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|308098900|gb|HO760741.1|HO760741
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|21256772|gb|BQ453660.1|BQ453660
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|192325345|gb|FK017146.1|FK017146
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGG-CCCACTGTCATCTTGGTTCAACAATTACCAAG -TAGACATTTTCAGG-ATGCAGCCAEST: gi|14258605|gb|BG881513.1|BG881513
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCA
EST: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|193423964|gb|FK390303.1|FK390303
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|192320763|gb|FK013853.1|FK013853
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGG-CCCACTGTCATCTTGGTTCA-CAATTACCAAG -TAGACATTTTCAGG-ATGCAGCCACCATTATGATCA-CTACAT-GAC-AAEST: gi|11413960|gb|BF426035.1|BF426035
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
tatctaaatataaatgttgaaataattgttgcattcttttttctttctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAATCCGAGATCAGGGTTTTGAAGTTGATTACTTAAATATTGGTGGAGGAC
atctaaa putative branch site (score: 3)
ttgttgcattcttttt putative PPT
aaatataaatgttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcaatttgtagttctgcactactttatgttgattctcaatctttatctaaatataaatgttgaaataattgttgcattcttttttctttctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAATCCGAGATCAGGGTTTTGAAGTTGATTACTTAAATATTGGTGGAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - tgcacta
- - - - - - - - - - - - - - tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - aaatataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa