1 5' 3' | 2 5' 3' | 3 5' 3' |
gcaagtctatgattgattacggtaaaaaaaaaaaattaatgtcgctgttgtaccaaaataaataaaatgcctcattttcgccgttggactaccactacatattattcttagtttgtatgcattcattcttatgagtacagAGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAAGAAAAGATTCATCACCTGAAAACTGAGGCTGAGAGGATATCAGGGGATG
species | Glycine max |
transcript | GLYMA03G33790.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGAGTATAGGGCTCAGTTGGAGTACGAGTTTCAAAAGAAAGTGTCACAG AGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAAEST: gi|7284815|gb|AW597240.1|AW597240
genomic: CCGAGTATAGGGCTCAGTTGGAGTACGAGTTTCAAAAGAAAGTGTCACAGgcaagtctat ... atgagtacagAGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAA
EST: CCGAGTATAGGGCTCAGTTGGAGTACGAGTTTCAAAAGAAAGTGTCACAG AGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAAEST: gi|31307211|gb|CD392414.1|CD392414
genomic: CCGAGTATAGGGCTCAGTTGGAGTACGAGTTTCAAAAGAAAGTGTCACAGgcaagtctat ... atgagtacagAGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAA
EST: CCGAGTATAGGGCTCAGTTGGAGTACGAGTTTCAAAAGAAAGTGTCACAG AGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAAEST: gi|193512493|gb|FK469061.1|FK469061
genomic: CCGAGTATAGGGCTCAGTTGGAGTACGAGTTTCAAAAGAAAGTGTCACAGgcaagtctat ... atgagtacagAGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAA
EST: AAGTGTCGCAG AGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAA
genomic: AAGTGTCACAGgcaagtctat ... atgagtacagAGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAA
ggactaccactacatattattcttagtttgtatgcattcattcttatgagtacagAGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAAGAAAAGATTCATCACCTGAAAACTGAGGCTGAGAGGATATCAGGGGATG
ttcttat CT-rich tract
atattattcttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtctatgattgattacggtaaaaaaaaaaaattaatgtcgctgttgtaccaaaataaataaaatgcctcattttcgccgttggactaccactacatattattcttagtttgtatgcattcattcttatgagtacagAGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAAGAAAAGATTCATCACCTGAAAACTGAGGCTGAGAGGATATCAGGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT