Sequence
atgc intronic sequence ATGC exonic sequencegtaaagaagtcttttgctaaaatttaacttttcattttgtgaggaaaatttaagcgttatgaatttattgttcctatgtgtatccttgtagTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTCTGTCAATAACAG
Basic information
species | Glycine max |
transcript | GLYMA03G33740.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G33740.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaaagaagtcttttgctaaaatttaacttttcattttgtgaggaaaat-ttaagcgttatgaatttattgttcctatg-tgtatccttgtagTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTCTGTCAATAACAG
|||| | || |||| | ||| | ||| ||| | || | | ||| ||||||| || |||| ||| | ||||||| ||| |||| ||| |||||||||| |||||||| || ||| ||||| ||||| || | |||||||||||| || |||||||| ||||||||
gtaatgtagaaatttg----agcttaccgttttcaccgctgatctagatgccttgtctcatggatttatt-ttgttatgatgtgttattgtagTGTACACAGTATCACTGAGACAGCAGTTACAGGACGTCTCTAAGAAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAG
upper sequence: GLYMA03G33740.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaaaga--agtcttttgctaaaatttaacttttcattttgtgaggaaaatttaagcgttatgaatttattgttcctatgtgtatccttgtagTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTCTGTCAATAACAG
|||| | | || | | || ||| || || ||| | || ||| | || | || | ||| ||| || ||||||||||| | || ||| | |||||||| || |||||||||||||| ||||||||| | || |||||||||||||||||||||||||| ||||||||
gtaatgttcaactttgagattaagtttgttacttatgttcttgatggaacttt--gtcttgttgtttattcgtttg---gtgaattattgtagTCTACACCGTATCACTAAGACAGCAGTTGCAGGATGTTGGTAAGAAGCTTGTTAGTGCTCAGCATTATAACAAAGATGGTTCTGTAAATAACAG
upper sequence: GLYMA03G33740.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 3'ss of exon 3
gtaaagaagtcttttgctaaaatttaacttttcattttgtgag-gaaaatttaagcgttatgaatttattgttcctatgtgtatccttgtagTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTCTGTCAATAACAG
||||| || ||| || | ||| | | |||||| | || |||| | ||||||| | | | | | ||| | || |||||||||||||||||||||| |||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||| ||| |||| |||
gtaaaaaa---tttcacttgattttgaatcaaatttttgtttttggaagtttacactccatgaattgactcgttgtctttgtgtttttatagTCTACTCAGTGTCATTGAGGCAGCAATTACTAGATCTTGGGAAGAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTGTGTTAATAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtgaggaaaatttaagcgttatgaatttattgttcctatgtgtatccttgtagTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTCTGTCAATAACAG
tatcctt CT-rich tract
ttatgaatttattgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaagaagtcttttgctaaaatttaacttttcattttgtgaggaaaatttaagcgttatgaatttattgttcctatgtgtatccttgtagTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTCTGTCAATAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG