1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtactctttatacacagttattatgctatctatcaataattgccacaaaaggaattgttatttgaatttcaacctacactttcttttgcaatcttttagGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTGATGGAAGGGCCAGTTGTTAAACGCCAAGCCACAAGTACCCTCCACTCTA
species | Glycine max |
transcript | GLYMA03G33560.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGATAAAGTGGCAGCTATCAAAATTCAAACAGCTTTTCGTGGATACTTG GCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGEST: gi|207817312|gb|GD789329.1|GD789329
genomic: AGGATGAAGTGGCAGCTATCAAAATTCAAACAGCTTTTCGTGGATACTTGgtacgggttg ... aatcttttagGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGG
EST: AAACAGCTTTTCGTGGANACTTG GCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTGEST: gi|208146421|gb|GD946258.1|GD946258
genomic: AAACAGCTTTTCGTGGATACTTGgtacgggttg ... aatcttttagGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTG
EST: AAACAGCTTTTCGTGGATACTTG GCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTGEST: gi|207729993|gb|GD708309.1|GD708309
genomic: AAACAGCTTTTCGTGGATACTTGgtacgggttg ... aatcttttagGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTG
EST: AAACAGCTTTTCGTGGATACTTG GCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTG
genomic: AAACAGCTTTTCGTGGATACTTGgtacgggttg ... aatcttttagGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTG
acaaaaggaattgttatttgaatttcaacctacactttcttttgcaatcttttagGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTGATGGAAGGGCCAGTTGTTAAACGCCAAGCCACAAGTACCCTCCACTCTA
tctttt CT-rich tract
aattgttatttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtactctttatacacagttattatgctatctatcaataattgccacaaaaggaattgttatttgaatttcaacctacactttcttttgcaatcttttagGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTGATGGAAGGGCCAGTTGTTAAACGCCAAGCCACAAGTACCCTCCACTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - atacaca
- - - - - - - - - - - - tgctatc
- - - - - - - - - - - - - - - - - - - - - -ccacaaa