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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgatatcactgctattgttctttgacttgtttgaacaaattttgttagcttttgatttcttgttaattttattttctcattggatctctaattaatcagGGTCCTCGTGGTTCCCGGGACCGGGAATATATGGGTCGGGGTCCACCTCCTGGATCTGGGCGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCCGAG

Basic information

species Glycine max
transcript GLYMA03G33270.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193696875|gb|FK638017.1|FK638017
EST:     TATTATTGTGGAATTTGCCAAGGGG                         GGTCCTCGTGGTTCCCGGGACCGGGAATATATGGGTCGGGGTCCACCTCCT
genomic: TATTATTGTGGAATTTGCCAAGGGGgtaggaatta ... aattaatcagGGTCCTCGTGGTTCCCGGGACCGGGAATATATGGGTCGGGGTCCACCTCCT
EST: gi|193684971|gb|FK626495.1|FK626495
EST:     TATTATTGTGGAATTTGCCAAGGGG                         GGTCCTCGTGGTTCCCGGGACCGGGAATATATGGGTCGGGGTCCACCTCCT
genomic: TATTATTGTGGAATTTGCCAAGGGGgtaggaatta ... aattaatcagGGTCCTCGTGGTTCCCGGGACCGGGAATATATGGGTCGGGGTCCACCTCCT
EST: gi|254344581|gb|GR855452.1|GR855452
EST:     ATGGTCGTGATGTTGAAGGAAGTCGTATTATTGTGGAATTTGCCAAGGGG                         GGTCCTCGTGGTTCCCGGGACCGGGAATATATGGGTCGGGGTCCACCTCCT
genomic: ATGGTCGTGATGTTGAAGGAAGTCGTATTATTGTGGAATTTGCCAAGGGGgtaggaatta ... aattaatcagGGTCCTCGTGGTTCCCGGGACCGGGAATATATGGGTCGGGGTCCACCTCCT
EST: gi|19347351|gb|BM892231.1|BM892231
EST:     ATGGTCGTGATGTTGAAGGAAGTCGTATTATTGTGGAATTTGCCAAGGGG                         GGTCCTCGTGGTTCCCGGGACCGGGAATATATGGGTCGGGGTCCACCTCCT
genomic: ATGGTCGTGATGTTGAAGGAAGTCGTATTATTGTGGAATTTGCCAAGGGGgtaggaatta ... aattaatcagGGTCCTCGTGGTTCCCGGGACCGGGAATATATGGGTCGGGGTCCACCTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagcttttgatttcttgttaattttattttctcattggatctctaattaatcagGGTCCTCGTGGTTCCCGGGACCGGGAATATATGGGTCGGGGTCCACCTCCTGGATCTGGGCGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCCGAG
                                         ctctaat  putative branch site (score: 3)
     ttttgatttcttgtta  TA-rich tract