1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttgatactattgaaaatgaagataataaattgatagtgattcttctttttacaatggtttatgtgccacctctaacaatgtattttcatactttgcagTTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAAT
species | Glycine max |
transcript | GLYMA03G33080.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAG TTTTACCATTCATACTGGTGCTGGTCTGATEST: gi|120532038|gb|EH260171.1|EH260171
genomic: TGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGgtatgatgaa ... tactttgcagTTTTACCATTCATACTGGTGCTGGTCTGAT
EST: TGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAG TTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGAEST: gi|193479421|gb|FK444206.1|FK444206
genomic: TGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGgtatgatgaa ... tactttgcagTTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGA
EST: TGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAG TTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGAEST: gi|9986785|gb|BE660893.1|BE660893
genomic: TGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGgtatgatgaa ... tactttgcagTTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGA
EST: TGCTTTGCCAAATTTGGTTCTCAGCTTGAGAATTTACATGGGANGCATAG NTTTACCATTCATACTGGTGCTGGGCTGAATATTEST: gi|298175599|gb|HO015118.1|HO015118
genomic: TGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGgtatgatgaa ... tactttgcagTTTTACCATTCATACTGGTGCTGGTCTGATTATT
EST: TGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAG TTTTACCATTCATACTGGTGCTGGTCTGATTAEST: gi|192298876|gb|FG987621.1|FG987621
genomic: TGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGgtatgatgaa ... tactttgcagTTTTACCATTCATACTGGTGCTGGTCTGATTA
EST: TGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAG TTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGA
genomic: TGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGgtatgatgaa ... tactttgcagTTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGA
tctttttacaatggtttatgtgccacctctaacaatgtattttcatactttgcagTTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAAT
ctctaac putative branch site (score: 2)
ttttcat putative PPT
taacaatgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgatactattgaaaatgaagataataaattgatagtgattcttctttttacaatggtttatgtgccacctctaacaatgtattttcatactttgcagTTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - aatgaag
- - - - - - - - - - - - - - - - -gatagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgta