1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agccaccgtgattttgcctggtgaggaaaataacctgagaaacaatgtttctatcatatagtgactgaaaaaactgttgtattgatgattataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTTATCATTCCTCACACTCACACCCTCCTCTTAATGAGAGGATTATTTCAT
species | Glycine max |
transcript | GLYMA03G33000.6 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT GTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTEST: gi|298199436|gb|HO042799.1|HO042799
genomic: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTgtaagaaata ... ataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCT
EST: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT GTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTEST: gi|7925031|gb|AW831057.1|AW831057
genomic: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTgtaagaaata ... ataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCT
EST: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT GTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTEST: gi|8827754|gb|BE211484.1|BE211484
genomic: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTgtaagaaata ... ataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCT
EST: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT GTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTEST: gi|27446381|gb|CA953504.1|CA953504
genomic: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTgtaagaaata ... ataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCT
EST: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT GTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTEST: gi|192324459|gb|FK015810.1|FK015810
genomic: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTgtaagaaata ... ataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCT
EST: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT GTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTEST: gi|5510301|gb|AI856743.1|AI856743
genomic: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTgtaagaaata ... ataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCT
EST: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT GTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTEST: gi|193656797|gb|FK606713.1|FK606713
genomic: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTgtaagaaata ... ataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCT
EST: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT GTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTEST: gi|192296495|gb|FG989111.1|FG989111
genomic: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTgtaagaaata ... ataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCT
EST: GGCCACAGATGGTTGAAACTGATATGGATGCCGAAACT GTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTEST: gi|9986811|gb|BE660919.1|BE660919
genomic: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTgtaagaaata ... ataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCT
EST: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT GTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCT
genomic: GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTgtaagaaata ... ataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCT
tgtttctatcatatagtgactgaaaaaactgttgtattgatgattataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTTATCATTCCTCACACTCACACCCTCCTCTTAATGAGAGGATTATTTCAT
tattgat putative branch site (score: 3)
ttgtattgatgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agccaccgtgattttgcctggtgaggaaaataacctgagaaacaatgtttctatcatatagtgactgaaaaaactgttgtattgatgattataatttcagGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAACAGTGTTCCCATCTCTTATCATTCCTCACACTCACACCCTCCTCTTAATGAGAGGATTATTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT