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...ctagaaagggtttagaatttcatatagatgtagcaggcagttgcatgatggtctaaaacaactagcataaatttatttttcatgggtatgattgcaacagTTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATG
species | Glycine max |
transcript | GLYMA03G31790.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGA TTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATEST: gi|22929412|gb|BU546551.1|BU546551
genomic: ATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGAgtaagtttac ... attgcaacagTTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGAT
EST: ATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGA TTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATEST: gi|7693452|gb|AW761544.1|AW761544
genomic: ATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGAgtaagtttac ... attgcaacagTTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGAT
EST: ATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGA TTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATEST: gi|208289260|gb|GE084965.1|GE084965
genomic: ATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGAgtaagtttac ... attgcaacagTTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGAT
EST: ATGAGCAGGCATTGGATGGACTGCAAGATAGAGTCAATCTGCTGAAAAGA TTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATEST: gi|7286192|gb|AW598679.1|AW598679
genomic: ATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGAgtaagtttac ... attgcaacagTTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGAT
EST: ATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGA TTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATEST: gi|17963404|gb|BM270153.1|BM270153
genomic: ATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGAgtaagtttac ... attgcaacagTTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGAT
EST: ATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGA TTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGAT
genomic: ATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGAgtaagtttac ... attgcaacagTTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGAT
tgatggtctaaaacaactagcataaatttatttttcatgggtatgattgcaacagTTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATG
gtctaaa putative branch site (score: 3)
taaaacaactagcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagaaagggtttagaatttcatatagatgtagcaggcagttgcatgatggtctaaaacaactagcataaatttatttttcatgggtatgattgcaacagTTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - gcaggca
- - - - - - - - - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtatg