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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaccttttgaaaacattttaatttaatttattactttaatcaaacagtgttagtgttgttctgtttcgtgttctttagtttttgcttctgtgcaataatggaaaattggcttttatggctggtagAATTTCCATTTGAGATACGGGCTTTGGAAGCTTTATTTGAGGCAATTTGTAGTTTTCTTGACGCACGAACGAGAGAATTAGAGACTTCTGCTTATCCAGC

Basic information

species Glycine max
transcript GLYMA03G31600.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403709|gb|EV273519.1|EV273519
EST:     AGGAAAAGAAGAGGCTTGTGCTCAAGATGGTGAAGGTGGAGAAGAAAATG                         AATTTCCATTTGAGATACGGGCTTTGGAAGCTTTATTTGAGGCAATTTGTA
genomic: AGGAAAAGAAGAGGCTTGTGCTCAAGATGGTGAAGGTGGAGAAGAAAATGgtgcaccttt ... tggctggtagAATTTCCATTTGAGATACGGGCTTTGGAAGCTTTATTTGAGGCAATTTGTA
EST: gi|13481310|gb|BG510653.1|BG510653
EST:     AGGAAAAGAAGAGGCTTGTGCTCAAGATGGTGAAGGTGGAGAAGAAAATG                         AATTTCCATTTGAGATACGGGCTTTGGAAGCTTTATTTGAGGCAATTTGTA
genomic: AGGAAAAGAAGAGGCTTGTGCTCAAGATGGTGAAGGTGGAGAAGAAAATGgtgcaccttt ... tggctggtagAATTTCCATTTGAGATACGGGCTTTGGAAGCTTTATTTGAGGCAATTTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttagtttttgcttctgtgcaataatggaaaattggcttttatggctggtagAATTTCCATTTGAGATACGGGCTTTGGAAGCTTTATTTGAGGCAATTTGTAGTTTTCTTGACGCACGAACGAGAGAATTAGAGACTTCTGCTTATCCAGC
                                       cttttat  CT-rich tract
                       aataatggaaaatt  TA-rich tract