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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgttgctaaaactgttttgctgtgtctactgtataattgttatgcttgttttggcatttctaagaaatatctcatgtttcaaaatatttcctcaagcagCTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGCTGCTGAAAAAGCAAACTAGAAAGCTTGACGGTTATGAATAATAGTTTTT

Basic information

species Glycine max
transcript GLYMA03G30320.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18041443|gb|BM309737.1|BM309737
EST:     ATATGTGTGTGAAGGAATTTGAGGCACTAAAAAGTTGTATGCAGAATATG                         CTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGC
genomic: ATATGTGTGTGAAGGAATTTGAGGCACTAAAAAGTTGTATGCAGAATATGgtattgaatt ... cctcaagcagCTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGC
EST: gi|213605039|gb|DB956372.1|DB956372
EST:     ATATGTGTGTGAAGGAATTTGAGGCACTAAAAAGTTGTATGCAGAATATG                         CTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGC
genomic: ATATGTGTGTGAAGGAATTTGAGGCACTAAAAAGTTGTATGCAGAATATGgtattgaatt ... cctcaagcagCTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGC
EST: gi|193671972|gb|FK616718.1|FK616718
EST:     TGAAGGAATTTGAGGCACTAAAAAGTTGTATGCAGAATATG                         CTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGGGC
genomic: TGAAGGAATTTGAGGCACTAAAAAGTTGTATGCAGAATATGgtattgaatt ... cctcaagcagCTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGC
EST: gi|209699814|gb|BW661124.1|BW661124
EST:     ATATGTGTGTGAAGGAATTTGAGGCACTAAAAAGTTGTATGCAGAATATG                         CTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGC
genomic: ATATGTGTGTGAAGGAATTTGAGGCACTAAAAAGTTGTATGCAGAATATGgtattgaatt ... cctcaagcagCTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGC
EST: gi|14126404|gb|BG790842.1|BG790842
EST:     ATATGTGTGTGAAGGAATTTGAGGCACTAAAAAGTTGTATGCAGAATATG                         CTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGC
genomic: ATATGTGTGTGAAGGAATTTGAGGCACTAAAAAGTTGTATGCAGAATATGgtattgaatt ... cctcaagcagCTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttttggcatttctaagaaatatctcatgtttcaaaatatttcctcaagcagCTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGCTGCTGAAAAAGCAAACTAGAAAGCTTGACGGTTATGAATAATAGTTTTT
                                        tatttcctc  CT-rich tract
                             atgtttcaaaatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgttgctaaaactgttttgctgtgtctactgtataattgttatgcttgttttggcatttctaagaaatatctcatgtttcaaaatatttcctcaagcagCTAAAAAAGAAGGTTTAAGTGAACTCGCTCTTGTGTTCTTGTTCTGGGAGCTGCTGAAAAAGCAAACTAGAAAGCTTGACGGTTATGAATAATAGTTTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
ctgttgc
- - - - - - - - -ttgctgt
- - - - - - - - - - - - -tctactg
- - - - - - - - - - - - - - - - - - - tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt