1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttctgcttattgggcattggtgtaaaagaacaactgtcatctatcatttagtgttctctattttaagtttcttttctttttttcccatcattttttcagTTTGGCAAAAGCTTGAAGAAGAAAATGAAGAATTCTTCAAGGCTTATTATGCAAGGTTGGTTTTGAAGCAGCAAATAATGCAATTCAACAAATTGCTGGA
species | Glycine max |
transcript | GLYMA03G28550.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAAACACTACTAGCTCAAGCAAAAATAGAGCCTGGTTTCACTGAACTAG TTTGGCAAAAGCTTGAAGAAGAAAATGAAGAATTCTTCAAGGCTTATTATGEST: gi|213600666|gb|DB956184.1|DB956184
genomic: GGAAACACTACTAGCTCAAGCAAAAATAGAGCCTGGTTTCACTGAACTAGgtaaagaaaa ... attttttcagTTTGGCAAAAGCTTGAAGAAGAAAATGAAGAATTCTTCAAGGCTTATTATG
EST: GGAAACACTACTAGCTCAAGCAAAAATAGAGCCTGGTTTCACTGAACTAG TTTGGCAAAAGCTTGAAGAAGAAAATGAAGAATTCTTCAAGGCTTATTATGEST: gi|213608255|gb|DB963073.1|DB963073
genomic: GGAAACACTACTAGCTCAAGCAAAAATAGAGCCTGGTTTCACTGAACTAGgtaaagaaaa ... attttttcagTTTGGCAAAAGCTTGAAGAAGAAAATGAAGAATTCTTCAAGGCTTATTATG
EST: GGAAACACTACTAGCTCAAGCAAAAATAGAGCCTGGTTTCACTGAACTAG TTTGGCAAAAGCTTGAAGAAGAAAATGAAGAATTCTTCAAGGCTTATTATG
genomic: GGAAACACTACTAGCTCAAGCAAAAATAGAGCCTGGTTTCACTGAACTAGgtaaagaaaa ... attttttcagTTTGGCAAAAGCTTGAAGAAGAAAATGAAGAATTCTTCAAGGCTTATTATG
catttagtgttctctattttaagtttcttttctttttttcccatcattttttcagTTTGGCAAAAGCTTGAAGAAGAAAATGAAGAATTCTTCAAGGCTTATTATGCAAGGTTGGTTTTGAAGCAGCAAATAATGCAATTCAACAAATTGCTGGA
ttttaagtttcttttc CT-rich tract
tctattttaagtttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctgcttattgggcattggtgtaaaagaacaactgtcatctatcatttagtgttctctattttaagtttcttttctttttttcccatcattttttcagTTTGGCAAAAGCTTGAAGAAGAAAATGAAGAATTCTTCAAGGCTTATTATGCAAGGTTGGTTTTGAAGCAGCAAATAATGCAATTCAACAAATTGCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
-ttctgct
- - - - - - - - attggtg
- - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - -caactgt