1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaataaatactgataggaatgcatgatattagaattgtcatccccatgtttgcaccttataaacctctatttactcttttgtttttatattatctttcagATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAATAAG
species | Glycine max |
transcript | GLYMA03G28320.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGCAATCTCTTGGATTTCGTGTTGAAGATACCATTAATCTTAGCAGAA ATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATAEST: gi|120530210|gb|EH258344.1|EH258344
genomic: GGAGCAATCTCTTGGATTTCGTGTTGAAGATACCATTAATCTTAGCAGAAgtatgttgct ... tatctttcagATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATA
EST: GGAGCAATCTCTTGGATTTCGTGTTGAAGATACCATTAATCTTAGCAGAA ATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATA
genomic: GGAGCAATCTCTTGGATTTCGTGTTGAAGATACCATTAATCTTAGCAGAAgtatgttgct ... tatctttcagATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATA
atgtttgcaccttataaacctctatttactcttttgtttttatattatctttcagATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAATAAG
ttatctttc CT-rich tract
tatttactcttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaataaatactgataggaatgcatgatattagaattgtcatccccatgtttgcaccttataaacctctatttactcttttgtttttatattatctttcagATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -ctgatag
- - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - catcccc
- - - - - - - - - - - - - - - - - - - - - - - - - tgcacct