Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttaaatgcataatcagttaatcttaatcttaattctattcatttgttactattagtactatttttttttttgtattgctttgagataacatggttttactctctgtttgggatggattagGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTGTAGTAACAGTTGCTGGGGCCATGTTGATGACATTGTACAAAGGG

Basic information

species Glycine max
transcript GLYMA03G27760.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27760.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g00800.t01 (Vitis vinifera), 3'ss of exon 3
gtaaatttaaatgcataatcagttaatcttaatcttaattc-tattcatttgttactattagtactatttttttttttgtattgctttgagataacatggttttactctctgtttgggatggat-tagGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTGTAGTAACAGTTGCTGGGGCCATGTTGATGACATTGTACAAAGGG
                                | |   |    ||| || | |  || |   | || | || | ||||| | |   | |    |   || | | ||     ||   | ||  || |||||||||||||||| || |||  ||  | |||||||||||||||||| | ||||| || || || || || |||||||||||||||||||| || || || 
-------------------------------gtatgggtctacattaatctctcgctctccct-ctctcttgtgttttgaactagctag---cacggtgatgtaacatggggtgatgaatatatatagGATGGAGAAGTTAGACATGAAGAAGTTTAGATGCCAAGCAAAGGTGGTGGGAACCGTGGTGACTGTGGCAGGGGCCATGTTGATGACATTATATAAGGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596061|gb|DB966308.1|DB966308
EST:     ATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAG                         GATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG
genomic: ATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAGgtaaatttaa ... gatggattagGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG
EST: gi|213597584|gb|DB962550.1|DB962550
EST:     ATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAG                         GATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG
genomic: ATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAGgtaaatttaa ... gatggattagGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG
EST: gi|23726100|gb|BU761030.1|BU761030
EST:     ATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAG                         GATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGGGATTGG
genomic: ATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAGgtaaatttaa ... gatggattagGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG
EST: gi|151401707|gb|EV271520.1|EV271520
EST:     ATAAGCAACATGCTCCCTGCTACGACATTTGTGATGGCTGCTATTTTCAG                         GATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG
genomic: ATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAGgtaaatttaa ... gatggattagGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG
EST: gi|213617303|gb|DB972913.1|DB972913
EST:     ATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAG                         GATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG
genomic: ATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAGgtaaatttaa ... gatggattagGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG
EST: gi|254320171|gb|GR829359.1|GR829359
EST:     ATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAG                         GATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG
genomic: ATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAGgtaaatttaa ... gatggattagGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttgtattgctttgagataacatggttttactctctgtttgggatggattagGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTGTAGTAACAGTTGCTGGGGCCATGTTGATGACATTGTACAAAGGG
                 agataac  putative branch site (score: 3)
                   ataacat  TA-rich tract