1 5' 3' | 2 5' 3' | 3 5' 3' |
gttagcatttgacatctatttattttgaagaacttttcattgtttcatctatttcgtacttgtcaatattgaatttatttctcctttgtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGACACATACATTATATTCGGCGAAGCCAAGATTGAAGACTTGAGCTCACAGC
species | Glycine max |
transcript | GLYMA03G27580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAGCCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAAT ATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCCGACTTCTGAEST: gi|7692485|gb|AW760590.1|AW760590
genomic: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAATgttagcattt ... gtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAG-CCCGACTTCTGA
EST: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAAT ATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGACEST: gi|120529122|gb|EH257256.1|EH257256
genomic: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAATgttagcattt ... gtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGAC
EST: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAAT ATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGACEST: gi|192331245|gb|FK023756.1|FK023756
genomic: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAATgttagcattt ... gtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGAC
EST: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGC-AAAAT ATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGACEST: gi|19937243|gb|BQ081212.1|BQ081212
genomic: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAATgttagcattt ... gtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGAC
EST: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAAT ATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGACEST: gi|208099271|gb|GD899220.1|GD899220
genomic: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAATgttagcattt ... gtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGAC
EST: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAAT ATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGACEST: gi|193345380|gb|FK312959.1|FK312959
genomic: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAATgttagcattt ... gtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGAC
EST: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAAT ATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGACEST: gi|120494539|gb|EH222706.1|EH222706
genomic: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAATgttagcattt ... gtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGAC
EST: TTAAGAAGAGCAAAAAT ATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGACEST: gi|193446090|gb|FK414469.1|FK414469
genomic: TTAAGAAGAGCAAAAATgttagcattt ... gtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGAC
EST: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAAT ATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGACEST: gi|193367408|gb|FK329532.1|FK329532
genomic: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAATgttagcattt ... gtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGAC
EST: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGC-AAAAT ATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGAC
genomic: TGAAACCTGTCACAGGTGTCAGTCGTGTGACTGTTAAGAAGAGCAAAAATgttagcattt ... gtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGAC
tttcatctatttcgtacttgtcaatattgaatttatttctcctttgtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGACACATACATTATATTCGGCGAAGCCAAGATTGAAGACTTGAGCTCACAGC
tttatttctcctttgt CT-rich tract
ttgtcaatattgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcatttgacatctatttattttgaagaacttttcattgtttcatctatttcgtacttgtcaatattgaatttatttctcctttgtttgtttagATCCTGTTTGTTATATCAAAACCAGATGTTTTCAAGAGCCCGACTTCTGACACATACATTATATTCGGCGAAGCCAAGATTGAAGACTTGAGCTCACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA