Sequence
atgc intronic sequence ATGC exonic sequence...caaatgtgaacaaatggatgatttgttgtttaacttgttttgtttttaggtaggccactgtttttaattttaagtgaagtattatgaattcttgttttagGATTTGAAGCTGGTGGCCCTAACACTCCTTCAAATATTGACCCTTGGTCAATTATTGGAAATGAATCATTGATAAATATTGAAACTGATCGCACCTCTTG
Basic information
species | Glycine max |
transcript | GLYMA03G27460.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G27460.3 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g03780.1 (Oryza sativa), 3'ss of exon 3
--caaatgtgaacaaatggatgatttgttgtttaacttgttttgtttttaggtaggccactgtttttaattttaagtgaagtattatgaattcttgttttagGATTTGAAGCTGGTGGCCCTAACACTCCTTCAAATATTGACCCTTGGTCAATTATTGGAAATGAATCATTGATAAATATTGAAACTGATCGCACCTCTTG
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actaaaacctagaaaatgaaacaaaagaatctgtgctttataaatttccattaacattgaagtatt--gccttcactgactaatgcaaaatttatacttcagGGTTTGAAGCTGGAGGGCCCCACACCCCTTCAAATATTGACCCATGGTCTATCATTGGAGATGAATCCTCTATATACGTCACGACTGATTGCTCATCTTG
upper sequence: GLYMA03G27460.3 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g20420.3 (Oryza sativa), 3'ss of exon 3
caaatgtgaacaaatggatgatttgttgtttaacttgttttgtttttaggtaggccac--tgtttttaattttaagtgaagtattatgaattcttgttttagGATTTGAAGCTGGTGGCCCTAACACTCCTTCAAATATTGACCCTTGGTCAATTATTGGAAATGAATCATTGATAAATATTGAAACTGATCGCACCTCTTG
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--gatctcgtttagtgaatggtttaaagattcagccctggatttctctgtttccttatgatgttatgttttctgtgcaaatttctaacagtccaagttacagGTTTCGAAGCTGGTGGCATTAATACTCCTTCAAATATTGACCCATGGTTGATAATTGGAGATGAGTCAAATATAATTGTGGAAACAGATAGGTCATCATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10237732|gb|BE806620.1|BE806620EST: GGGGATTGTGGGCTGAGCTTGTGAGCAACAGAG GATTTGAAGCTGGTGGCCCTAACACTCCTTCAAATATTGACCCTTGGTCAA
genomic: GGGGATTGTGGGCTGAGCTTGTGAGCAACAGAGgttattttca ... cttgttttagGATTTGAAGCTGGTGGCCCTAACACTCCTTCAAATATTGACCCTTGGTCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaggtaggccactgtttttaattttaagtgaagtattatgaattcttgttttagGATTTGAAGCTGGTGGCCCTAACACTCCTTCAAATATTGACCCTTGGTCAATTATTGGAAATGAATCATTGATAAATATTGAAACTGATCGCACCTCTTG
ttttaat putative branch site (score: 3)
ttcttgtttt putative PPT
tttttaattttaagtg TA-rich tract