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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttttagatccttatctgattactttcatttttattatttgtaatccttcatggctgagactgcaagtaatttatttactactttgatcttctttcagAATATTGAGCAAGGGAAGAAATACAAAGTGGTCTTCTATGTTCGTTCAACTGAATCACTTAATCTAACAGTTTCATTAACTGGATCGAATGGTGTAGGAA

Basic information

species Glycine max
transcript GLYMA03G27460.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237732|gb|BE806620.1|BE806620
EST:     TCTGCCCCGCTGATGGTGTTGGTGTTTATAACCCTGGTTTCTGGGGCATG                         AATATTGAGCAAGGGAAGAAATACAAAGTGGTCTTCTATGTTCGTTCAACT
genomic: TCTGCCCCGCTGATGGTGTTGGTGTCTATAACCCTGGTTTCTGGGGCATGgtgagactaa ... cttctttcagAATATTGAGCAAGGGAAGAAATACAAAGTGGTCTTCTATGTTCGTTCAACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccttcatggctgagactgcaagtaatttatttactactttgatcttctttcagAATATTGAGCAAGGGAAGAAATACAAAGTGGTCTTCTATGTTCGTTCAACTGAATCACTTAATCTAACAGTTTCATTAACTGGATCGAATGGTGTAGGAA
                                      ctttgat  putative branch site (score: 5)
                                      ctttgatcttctttc  CT-rich tract
                     aagtaatttatttact  TA-rich tract