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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattaatatcacaaatttttattttatgaagaatgaaggttttctctttcataatttccttttttctatttgcaacaatttttgcacttttttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAGTGTCGCCGCCAGACTATTTCCGGCAGAGGCCATACCAAAGCACGAACCC

Basic information

species Glycine max
transcript GLYMA03G27180.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27180.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0021g02300.t01 (Vitis vinifera), 3'ss of exon 3
--aattaata-tcacaaatttttattt-tatgaagaatgaaggttttctctttcataatttccttttttctatttgcaacaatttttgcacttttttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAGTGTCGCCGCCA------------GACTATTTCCGGCAGAGGCCATACCAAAGCACGAACCC
  |  |  ||  |   ||| | | | | | ||    |     ||||| | |||   ||         |   |  ||       ||||    || |   | | ||| || || || || ||||||||||| || || ||||||||||| ||||| |||||||||||             || |  |||||||| ||||| |||||            
gtacgtggtagccgtgaatctctttctgtgtgtctcacaggtgttttttttttatcaaaacaaagcgtgaaaaatgatttgcattttttttttctgggttgtagGGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGGTGTCGCCGCCGCGGATGACGTTGGATTGCTTCCGGCAAAGGCCGTACCA------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207820770|gb|GD789681.1|GD789681
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|6913153|gb|AW394683.1|AW394683
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193445828|gb|FK414949.1|FK414949
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTC
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTC
EST: gi|7147172|gb|AW509094.1|AW509094
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193622781|gb|FK571513.1|FK571513
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|9901575|gb|BE610543.1|BE610543
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193559677|gb|FK515008.1|FK515008
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|14196129|gb|BE820003.2|BE820003
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|8284876|gb|BE022435.1|BE022435
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTTCCGGAGCTNNCAGTCTTCCTCG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACT-CCGGAGCT--CAGTCTTCCTCG
EST: gi|208275228|gb|GE068048.1|GE068048
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|8285524|gb|BE023083.1|BE023083
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193471780|gb|FK435719.1|FK435719
EST:     GTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: GTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|208282388|gb|GE075110.1|GE075110
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGG
EST: gi|10236075|gb|BE805023.1|BE805023
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193516998|gb|FK476080.1|FK476080
EST:     TCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: TCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193465461|gb|FK432436.1|FK432436
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193500045|gb|FK463926.1|FK463926
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193333184|gb|FK298718.1|FK298718
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcataatttccttttttctatttgcaacaatttttgcacttttttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAGTGTCGCCGCCAGACTATTTCCGGCAGAGGCCATACCAAAGCACGAACCC
                                 tttttgcacttttttt  CT-rich tract
     ataatttccttttttc  TA-rich tract