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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatgttcacttttacatttatgttacttcatttaaatttgtgaatcttgcaatattgatcaactcactattattatcgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTTTATAATGGCACAACAAAGAA

Basic information

species Glycine max
transcript GLYMA03G27030.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27030.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G118731_T01 (Zea mays), 3'ss of exon 3
-----------gtgagatgttcacttttacatttat-gttacttcatttaaatttgtgaatcttgcaatattgatcaactcactattattatcgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTTTATAATGGCACAACAAAGAA---
            |    || |    |||| || ||| ||| ||||||       | || ||  |  |||| |   |   | | |  |    |      |||   |||||||| ||  ||||  | ||||| |||| ||||||||||||||||||| || | ||||||||||| || ||  | || ||||| ||||| |||||   
gtaatcaaaatatcttgtggtgttgtttatatatatcgttgcttcatgcttccctttggat--taaaatactacactggttatttat-cggtttatggttaatagGTGGTAGCTCAAGAGGACGCAGACAAAAGCGTGGTGAAGATGTGGTGCATACTATGAAGGTTTCCTTAGACGATCTGTACAATGGGACAACCAAGAAACT

upper sequence: GLYMA03G27030.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0021g02090.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------gtgagatgttcacttttacatttatgt---tacttcatttaaatttgt---gaatcttgcaat-----attgatcaactcactattattatcgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTTTATAATGGCACAACAAAGAA
                           |     | || | |||| ||  | |||   || ||| | |  |  | |   |||  || ||||     ||| |   | || | | |||  |    |  ||||||||||||| ||  |||| ||||| ||||| |  ||||||||||| |||||| |||| |||||||| ||||||||| | |||||||||||| |||||||
gtaagaggatgcttacttaaatttcttgatctttatttattttttcaaatgtgtacttatttcctgtctacctttaaagaaattttcaattatatatttactgattcccaagtatc-taattttgtagGTGGTGGTAGCTCAAGAGGAAGAAGGCAGAAACGAGGTGAAGATGTTGTGCATACTTTGAAGGTTTCTTTGGAGGACTTGTATAATGGCACATCAAAGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045969|gb|CA783365.1|CA783365
EST:     T-ATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|24135816|gb|BU926326.1|BU926326
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAACATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|18040422|gb|BM308716.1|BM308716
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|254323522|gb|GR835968.1|GR835968
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|208114453|gb|GD908522.1|GD908522
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|24136970|gb|BU927480.1|BU927480
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|209707884|gb|BW657002.1|BW657002
EST:     AAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: AA-TCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|254335361|gb|GR846858.1|GR846858
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|19345767|gb|BM890647.1|BM890647
EST:     ATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: ATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|254319865|gb|GR830889.1|GR830889
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|42722495|gb|CK768394.1|CK768394
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|254331143|gb|GR843262.1|GR843262
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|254348976|gb|GR860248.1|GR860248
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|14258951|gb|BG881859.1|BG881859
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|23727038|gb|BU761533.1|BU761533
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAAACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|13791552|gb|BG654143.1|BG654143
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|19453462|gb|BM954872.1|BM954872
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|7685781|gb|AW756429.1|AW756429
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|7233109|gb|AW568459.1|AW568459
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|213599223|gb|DB962274.1|DB962274
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|18690716|gb|BM519564.1|BM519564
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|16997284|gb|BM086656.1|BM086656
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|5606035|gb|AI900133.1|AI900133
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|15201211|gb|BI424752.1|BI424752
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|23727594|gb|BU761832.1|BU761832
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|192331510|gb|FK023415.1|FK023415
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|16996576|gb|BM085948.1|BM085948
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|19453406|gb|BM954816.1|BM954816
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|16106237|gb|BI893977.1|BI893977
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|254347759|gb|GR854008.1|GR854008
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|19936712|gb|BQ080984.1|BQ080984
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|192309090|gb|FG999051.1|FG999051
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|254321258|gb|GR827707.1|GR827707
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|11412310|gb|BF424321.1|BF424321
EST:     TAATCCATTTGATATATTTGAATCATTATTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCTAGGTAGAAGACATAAGCATGCG-GAAGATGTGGTG
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATG-GTGAAGATGTGGTG
EST: gi|213596853|gb|DB958061.1|DB958061
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|7233167|gb|AW568516.1|AW568516
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|7589650|gb|AW705420.1|AW705420
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGGGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|254317647|gb|GR826631.1|GR826631
EST:     ATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: ATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|18040608|gb|BM308902.1|BM308902
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCAT
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCAT
EST: gi|254319441|gb|GR830692.1|GR830692
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|254328558|gb|GR832930.1|GR832930
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: gi|7589082|gb|AW704864.1|AW704864
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGAG                         GTGGTGGTAGTTTCCGAGGT
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGT
EST: gi|207756348|gb|GD729529.1|GD729529
EST:     TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTG                         GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
genomic: TAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGgtgagatgtt ... cgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatttgtgaatcttgcaatattgatcaactcactattattatcgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTTTATAATGGCACAACAAAGAA
                             aactcac  putative branch site (score: 2)
                                            tcgcctctt  putative PPT
                                  actattattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagatgttcacttttacatttatgttacttcatttaaatttgtgaatcttgcaatattgatcaactcactattattatcgcctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTTTATAATGGCACAACAAAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA