1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaatctcaatgctggaaattgtgggaataatttgtatatgtgtgctattatatgagtttcttttctaatctatggattatttactttttcttaggggcatcttgtgttattcctatctaaatactcatcgcaataactcaatcacgaactcgttcaatttgtcttgtcaacagGTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGACTTCAAGCTGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGCTACTCTGG
species | Glycine max |
transcript | GLYMA03G14780.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTG GTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGACEST: gi|7685497|gb|AW756145.1|AW756145
genomic: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTGgtaaatctca ... ttgtcaacagGTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGAC
EST: GTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGGCATT-ACAACTG GTGCTTTTGCAATTGCAGTGGCGAATCCAACCGATCTTGTCAAAGTTAGACEST: gi|209724656|gb|BW677736.1|BW677736
genomic: GTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTG-CATTTACAACTGgtaaatctca ... ttgtcaacagGTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGAC
EST: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTG GTGCTTTTGCAATTGCAGTGGCAAATCCAAACGATCTTGTCAAAGTTAGACEST: gi|151397018|gb|EV266891.1|EV266891
genomic: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTGgtaaatctca ... ttgtcaacagGTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGAC
EST: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTG GTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGACEST: gi|193591617|gb|FK545990.1|FK545990
genomic: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTGgtaaatctca ... ttgtcaacagGTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGAC
EST: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTG GTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGACEST: gi|213595388|gb|DB966526.1|DB966526
genomic: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTGgtaaatctca ... ttgtcaacagGTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGAC
EST: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTG GTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGACEST: gi|7685710|gb|AW756358.1|AW756358
genomic: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTGgtaaatctca ... ttgtcaacagGTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGAC
EST: TGTGGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTG GTGCTTGTGCAATTGGCAG-GGCAAATGCAACCGATCTTGTCATAGGTAGAEST: gi|151396786|gb|EV266659.1|EV266659
genomic: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTGgtaaatctca ... ttgtcaacagGTGCTTTTGCAATTG-CAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGA
EST: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTA GTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGACEST: gi|18734274|gb|BM528089.1|BM528089
genomic: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTGgtaaatctca ... ttgtcaacagGTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGAC
EST: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTG GTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGAC
genomic: TGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTGgtaaatctca ... ttgtcaacagGTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGAC
aaatactcatcgcaataactcaatcacgaactcgttcaatttgtcttgtcaacagGTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGACTTCAAGCTGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGCTACTCTGG
caataac putative branch site (score: 2)
tttgtctt putative PPT
ttcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatctcaatgctggaaattgtgggaataatttgtatatgtgtgctattatatgagtttcttttctaatctatggattatttactttttcttaggggcatcttgtgttattcctatctaaatactcatcgcaataactcaatcacgaactcgttcaatttgtcttgtcaacagGTGCTTTTGCAATTGCAGTGGCAAATCCAACCGATCTTGTCAAAGTTAGACTTCAAGCTGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGCTACTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA