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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtttgttgtgttgtgttgccttctcaattcacttttcatcaccactggttcctaatctgaaaagagaaaaaactacagtgactaaatagaatattgcactattctggatttttcagTGGTTCGAAGTCCTTGATGGGTTACTTGGTCCATATTGGAAAGCCCTGGGGCTAGCCTTCAACTGTACTTTCCTTCTCTTTGGATCTGTGATACAGCTTA

Basic information

species Glycine max
transcript GLYMA03G09100.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G09100.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 3
gttggtttgttgtgttgtgttgccttctcaatt--cacttttcatcaccactggttcctaatctgaaaagagaaaaaactacagtg-actaaatagaatattgcactattctggatttttcagTGGTTCGAAGTCCTTGATGGGTTACTTGGTCCATATTGGAAAGCCCTGGGGCTAGCCTTCAACTGTACTTTCCTTCTCTTTGGATCTGTGATACAGCTTA
||| ||||| |          ||      ||     |      ||| ||||| | | | |  |  |  ||  |  || || || |  || ||| || | | | |  | || | || ||  |||||||| ||||| |||||||||||| | ||||| || ||||||||  |||| || |||||||||||||||||||| |||||||||||||| || ||||| |
gttagtttgcttcaggccaaagcaaaacaaaacgctagcaaatatctccacttgctacaatccaaaccagttaccaatctccattttaccaaaaaggaaaattccttgtttttgaattc-cagTGGTTTGAAGTGCTTGATGGGTTATTGGGTCCTTACTGGAAAGCAGTGGGTCTGGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726838|gb|BW658346.1|BW658346
EST:     GCACCAGAAAGGAAAAGGAAAACGTCAGCTTCAAAAACCATGTCATTCAG                         TGGTTCGAAGTCCTTGATGGGTTACTTGGTCCATATTGGAAAGCCCTGGGG
genomic: GCACCAGAAAGGAAAAGGAAAACGTCAGCTTCAAAAACCATGTCATTCAGgttggtttgt ... gatttttcagTGGTTCGAAGTCCTTGATGGGTTACTTGGTCCATATTGGAAAGCCCTGGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagagaaaaaactacagtgactaaatagaatattgcactattctggatttttcagTGGTTCGAAGTCCTTGATGGGTTACTTGGTCCATATTGGAAAGCCCTGGGGCTAGCCTTCAACTGTACTTTCCTTCTCTTTGGATCTGTGATACAGCTTA
                  gactaaa  putative branch site (score: 2)
                                               tttttc  putative PPT
                   actaaatagaatatt  TA-rich tract