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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctataattaggaacaaatttattggtaattggtatttctgtatgtatatatcttctttttatgttgattagtgtttttcatttgttttagtgtttctacttttaatgttccagGTGATTCGGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAG

Basic information

species Glycine max
transcript GLYMA03G08120.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G08120.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G51870.1 (Arabidopsis thaliana), 3'ss of exon 3
gtctctataattaggaacaaatttattggtaattggtatttctgtatgtatatatcttctttttatgttgattagtgtt-tttcatttgttttagtgtttctacttttaa-tgtt---ccagGTGATTCGGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAG
                                   ||| || | |     | | | || | | |    ||||| || || | |    |  ||   |  ||||  ||  || |||     ||||||||  | ||  ||||||||||||| ||||||||||| |||||||| | |||||||
-----------------------------------gtaattgtttggacttgttttttttatatcaagtgattggttttgtcttgacttattggataattctgtttgaaaatgtgacatcagGTGATAAGAGTGTTACCTTACAGTGCGGTCCAGCTTTTGGCTTATGAGAGTTACAAG

upper sequence: GLYMA03G08120.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 3'ss of exon 3
----------gtctctataattaggaacaaatttattggtaattggtatttctgtatgtatatatcttctttttatgttgattagt--gtttttcatttgttttagtgtttcta-------cttttaat--gttccagGTGATTCGGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAG
            ||  |   |    |    ||  ||  |   ||    |  |||| |     |||||| ||   |  ||| |  |    || || |||   || | |||   ||       ||||| ||  |||||||||||| ||  | |||||||||||||| |||||||| ||||||||||||| |||||||
gtcctttgcatccttcactttctaaattgcatggataagcttttctcttcactgtttcagagtatctttttccaagattgttgggataattctttattgaattgaatgtacttaaggatttcttttgatttgttccagGTGATACGTATCATACCTTACAGTGCCGTCCAGCTGTTTGCTTATGAAACTTACAAG

upper sequence: GLYMA03G08120.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S52_69V6.1 (Physcomitrella patens), 3'ss of exon 5
gtctctataattaggaacaaatttattggtaattggtatttctgtatgtatatatcttctttttatgttgattagtgtttttcatttg--ttttagtgtttctacttttaatgt-tccagGTGATTCGGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAG
                   | |   ||    | |||     || | |   || | | |||||   |||   ||  || || | | |    | | |   ||   |  |   || | | |||||  | || || |||||||||||||| || || ||||||||||||||  ||||||||
-------------------agtaccttctctactggaccaactttcttggtaaaacgtctttcc-tgtcagttgctgcttctgaataagatctgaccattctgatatgggatatgtgcagGTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgttgattagtgtttttcatttgttttagtgtttctacttttaatgttccagGTGATTCGGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAG
                                         ttttaat  putative branch site (score: 3)
               tttttcatttgtttta  TA-rich tract