Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacatttttaaacttggttgccatatagtgttgcttgttatgaccaaattattgttcgtttggatatctggacaatattgtcacttttgcatattcatgtcaagattttttaattgagttttggacaattttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGACGAAGAGTCAAAG

Basic information

species Glycine max
transcript GLYMA03G06440.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298188907|gb|HO035600.1|HO035600
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|151396175|gb|EV266052.1|EV266052
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|192300483|gb|FG987910.1|FG987910
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|7284412|gb|AW597004.1|AW597004
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|9203665|gb|BE329889.1|BE329889
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|298196174|gb|HO044565.1|HO044565
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGGAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|9986822|gb|BE660930.1|BE660930
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|298190510|gb|HO032631.1|HO032631
EST:     TGTTGATGGCAAGGTTAGAACAGACAAGACATACCCTGCTGGTTTCACGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|13789053|gb|BG651644.1|BG651644
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|298186402|gb|HO037035.1|HO037035
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|17401982|gb|BM178764.1|BM178764
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgcatattcatgtcaagattttttaattgagttttggacaattttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGACGAAGAGTCAAAG
                        ttttaat  putative branch site (score: 3)
                  aagattttttaattga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtacatttttaaacttggttgccatatagtgttgcttgttatgaccaaattattgttcgtttggatatctggacaatattgtcacttttgcatattcatgtcaagattttttaattgagttttggacaattttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGACGAAGAGTCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA