1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccaaattatcgctgggttcaattgtaaatttgttcgttttatttattgctgcctatacagaatcccttaccttttctaatatgattaaatcttggtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCATTTCATAGCATTCTTTAGTGATGGAGAAATTCCTGGAACACCTGGCTCTC
species | Glycine max |
transcript | GLYMA03G02930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGTCAACTGTGTCGGGGCTCTAAATTACAAATATTTCCTTCTTTTCTTG TTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCATEST: gi|27424346|gb|CA935866.1|CA935866
genomic: TAGTCAACTGTGTCGGGGCTCTAAATTACAAATATTTCCTTCTTTTCTTGgtatggacgc ... cttggtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCAT
EST: TAGTCAACTGTGTCGGGGCTCTAAATTACAAATATTTCCTTCTTTTCTTG TTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCATEST: gi|151408618|gb|EV278426.1|EV278426
genomic: TAGTCAACTGTGTCGGGGCTCTAAATTACAAATATTTCCTTCTTTTCTTGgtatggacgc ... cttggtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCAT
EST: TAGTCAACTGTGTCGGGGCTCTAAATTACAAATATTTCCTTCTTTTCTTG TTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCAT
genomic: TAGTCAACTGTGTCGGGGCTCTAAATTACAAATATTTCCTTCTTTTCTTGgtatggacgc ... cttggtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCAT
ttgctgcctatacagaatcccttaccttttctaatatgattaaatcttggtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCATTTCATAGCATTCTTTAGTGATGGAGAAATTCCTGGAACACCTGGCTCTC
ttctaat putative branch site (score: 2)
ttttctaatatgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaattatcgctgggttcaattgtaaatttgttcgttttatttattgctgcctatacagaatcccttaccttttctaatatgattaaatcttggtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCATTTCATAGCATTCTTTAGTGATGGAGAAATTCCTGGAACACCTGGCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
ccaaatt
- - - - - - - - - - - - - - - - - - - - - - -ttgctgc