1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttttaagttttaactgactgttgttattatgagtaatggccttcatattgaatcaattatcaatctcatattttgtattttctacttttgttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTTTAGCCGAACTTGGTTTTGAA
species | Glycine max |
transcript | GLYMA03G02240.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|207805526|gb|GD776449.1|GD776449
genomic: AACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACAEST: gi|208074055|gb|GD867804.1|GD867804
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACA
EST: CGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|193532858|gb|FK493280.1|FK493280
genomic: CGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: TTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|208337807|gb|GE135203.1|GE135203
genomic: TTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|208205857|gb|GE006198.1|GE006198
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CGGCCG-TTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|58020613|gb|CX707355.1|CX707355
genomic: CGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|22929929|gb|BU547068.1|BU547068
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|31467784|gb|CD409812.1|CD409812
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|213604465|gb|DB978253.1|DB978253
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|193512610|gb|FK471810.1|FK471810
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|209707164|gb|BW656781.1|BW656781
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|7234436|gb|AW569773.1|AW569773
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|208272691|gb|GE067093.1|GE067093
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|192317009|gb|FK010912.1|FK010912
genomic: CGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|208113662|gb|GD911189.1|GD911189
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: AAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|213603370|gb|DB981971.1|DB981971
genomic: AAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: AAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACA-AATCTTCATGGAAATGGAAGATTAGATGATGGCAAGGCEST: gi|193720076|gb|FK650488.1|FK650488
genomic: AAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTT-ATGGAAATGGAAGATTAGATGATGGCAAGGC
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|192317010|gb|FK010913.1|FK010913
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|31475122|gb|CD417150.1|CD417150
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|208320939|gb|GE123388.1|GE123388
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|208205417|gb|GE005324.1|GE005324
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: GCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|31310301|gb|CD395504.1|CD395504
genomic: GCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|192314096|gb|FK011132.1|FK011132
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|213593874|gb|DB983138.1|DB983138
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|192328075|gb|FK020378.1|FK020378
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAGATGGAAGATTAGATGATGGCAAGGCTEST: gi|209713909|gb|BW681914.1|BW681914
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|208256816|gb|GE051345.1|GE051345
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|151395245|gb|EV265116.1|EV265116
genomic: CGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGCTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|209717514|gb|BW653954.1|BW653954
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG TEST: gi|209717514|gb|BW653954.1|BW653954
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaag-
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG TEST: gi|209704041|gb|BW673641.1|BW673641
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaag-
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|207763999|gb|GD738864.1|GD738864
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: AAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|58016323|gb|CX703065.1|CX703065
genomic: AAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|208138618|gb|GD939750.1|GD939750
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CTTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTEST: gi|193485833|gb|FK451222.1|FK451222
genomic: C-TTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
atattgaatcaattatcaatctcatattttgtattttctacttttgttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTTTAGCCGAACTTGGTTTTGAA
ttttctacttttgttc CT-rich tract
aattatcaatctcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttaagttttaactgactgttgttattatgagtaatggccttcatattgaatcaattatcaatctcatattttgtattttctacttttgttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCTTTAGCCGAACTTGGTTTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - -actgttg
- - - - - - - - - - - - - - - - - - - -gccttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatctc