1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtttctttgcaatgttttactttctttctgtacgtgttttttttttctctggctctctggaaaatatatttatcttgatgtctttgcttccttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATTGCTTGATATACATTTGCATGACCATGTTGAGACACTTTATGATCAAATT
species | Glycine max |
transcript | GLYMA03G01880.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATTTTTACTCAAG TCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATT
genomic: GATTTTTACTCAAGgtaagttggt ... cttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATT
tctctggctctctggaaaatatatttatcttgatgtctttgcttccttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATTGCTTGATATACATTTGCATGACCATGTTGAGACACTTTATGATCAAATT
tcttgat putative branch site (score: 4)
tgtctttgcttccttt CT-rich tract
aaaatatatttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctttgcaatgttttactttctttctgtacgtgttttttttttctctggctctctggaaaatatatttatcttgatgtctttgcttccttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATTGCTTGATATACATTTGCATGACCATGTTGAGACACTTTATGATCAAATT
- - ctttgca
- - - - - - - - - - - -ctttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcttc