1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagctctccattatattgttgtgatggttcttcttttcaatctgaaacattgatggcattgtctttgttttttcttttttctttttcaatatctggcagAGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAG
species | Glycine max |
transcript | GLYMA03G01880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAG AGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTEST: gi|37997756|gb|CF809345.1|CF809345
genomic: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAGgcaagctctc ... tatctggcagAGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCT
EST: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAG AGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTEST: gi|298172715|gb|HO019755.1|HO019755
genomic: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAGgcaagctctc ... tatctggcagAGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCT
EST: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAG AGTAAAGTTGTAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTEST: gi|151408473|gb|EV278281.1|EV278281
genomic: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAGgcaagctctc ... tatctggcagAGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCT
EST: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAG AGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTEST: gi|58015910|gb|CX702652.1|CX702652
genomic: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAGgcaagctctc ... tatctggcagAGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCT
EST: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAG AGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCT
genomic: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAGgcaagctctc ... tatctggcagAGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCT
aaacattgatggcattgtctttgttttttcttttttctttttcaatatctggcagAGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAG
cattgat putative branch site (score: 4)
ttgtctttgttttttc putative PPT
tttgttttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagctctccattatattgttgtgatggttcttcttttcaatctgaaacattgatggcattgtctttgttttttcttttttctttttcaatatctggcagAGTAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG