Sequence
atgc intronic sequence ATGC exonic sequencegtaagttcttcatcactgccgacctttgcatatcttgcaaacttctaaatcgaaataacttccctaatgcagaaaccttgccttgcagATGTATCTTATTTCATTGAAGTGGACAGATTACTTCGCCCTGGTGGATATTTAGTCATTTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATG
Basic information
species | Glycine max |
transcript | GLYMA03G01870.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G01870.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G00740.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagttcttc-----atcactgccgacctttgcatatcttgcaaacttctaaatcgaaataacttccctaatgcagaaaccttgccttgcagATGTATCTTATTTCATTGAAGTGGACAGATTACTTCGCCCTGGTGGATATTTAGTCATTTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATG
|| ||| | | || | || | || | | | || | | | ||| | | | || || |||||||| | |||| ||||| ||||| || || ||||| |||||||| |||||| | || || ||||| || ||||| || |||||||||||||| ||||||||
gtgagtcccttgggttatatacctctacttatgtacgtgtgttgcggtttttagcagcaattattcttattgtgtttggtgatttgtctgcagATGCAACTTACTTCATCGAAGTAGATAGGTTACTGCGCCCTGGAGGATATCTTGTAATCTCTGGCCCACCTGTACAATGGCCTAAACAAGACAAAGAATG
upper sequence: GLYMA03G01870.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0048g01990.t01 (Vitis vinifera), 3'ss of exon 3
gtaagttcttcat-cactgccgacctttgcat--atcttgcaaacttctaaatcgaaataacttccctaatgcagaaaccttgccttgcagATGTATCTTATTTCATTGAAGTGGACAGATTACTTCGCCCTGGTGGATATTTAGTCATTTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATG
|| |||||| || || || | || || | | | |||| | | | | || |||| | || | ||||||||| | | |||||| |||||||||| | ||||||| || || || || | || || |||||||||||||| | ||||||||||||||||| |||||
gtgagttctatatgcaatgtggctattgaaatttacacttcttacttgtcctcctacttg--ctctgtaataaaatgttctggatttgcagATGCAACATATTTCCTTGAAGTGGATCGGCTACTTCGACCAGGAGGGTACCTTGTAATCTCTGGTCCCCCTGTACTATGGCCTAAACAAGATAAGGAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgcaaacttctaaatcgaaataacttccctaatgcagaaaccttgccttgcagATGTATCTTATTTCATTGAAGTGGACAGATTACTTCGCCCTGGTGGATATTTAGTCATTTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATG
ccttgcctt CT-rich tract
aaataactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcttcatcactgccgacctttgcatatcttgcaaacttctaaatcgaaataacttccctaatgcagaaaccttgccttgcagATGTATCTTATTTCATTGAAGTGGACAGATTACTTCGCCCTGGTGGATATTTAGTCATTTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA