Sequence
atgc intronic sequence ATGC exonic sequence...aggataagctctatatttatgggtacattaggaaggcatgttataacaattcttgattgcactataacttttgctatgtaattttcccacttctttgcagCTCCTTCGACCTATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACCAGCCTTCTCACAG
Basic information
species | Glycine max |
transcript | GLYMA03G01600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G01600.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G00630.1 (Arabidopsis thaliana), 3'ss of exon 9
aggataagctctatatttatgggtacattaggaaggcatgtta-taacaattcttg------attgcactataacttttgctatgtaatt-ttcccacttctttgcagCTCCTTCGACCTATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACCAGCCTTCTCACAG
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-------aatgggtttgcatgaacatataatgaaactctatagctaatgctgcttctgcggtgctgaatcatag-ttttacaatgcattgattttctggtacacacagCTTCTGCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGATATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGTTTACTTACAG
upper sequence: GLYMA03G01600.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 8
aggataagctctatatttatgggtacattaggaaggcatgttataacaattcttgattgcactataacttttgctatgta---attttcccacttct----ttgcagCTCCTTCGACCTATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACCAGCCTTCTCACAG
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--attgagacttgtgtt-acag---catctgatatgtttctcctt-cagttattatatgaagtacagcctgcaccttgcacttatttttttgcatctgcttttgcagCTACTTAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaattcttgattgcactataacttttgctatgtaattttcccacttctttgcagCTCCTTCGACCTATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACCAGCCTTCTCACAG
ttttcccacttctttg CT-rich tract
tatgtaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aggataagctctatatttatgggtacattaggaaggcatgttataacaattcttgattgcactataacttttgctatgtaattttcccacttctttgcagCTCCTTCGACCTATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACCAGCCTTCTCACAG
- - - - - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatg