1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgtgtagtgcatagtaatagtaatattatgttaaaatcattccacagtgataaaaatccattacgtattgcttttcatatttatcttacattttactagGGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAGGTATAAAGAGATGATGGAAGCCTACAGGGAGATGTTGACTTACATTAAG
species | Glycine max |
transcript | GLYMA03G00670.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGCTGGTTTTGCTGAGGTAGTGAGCATGGAACAAGAGAAGGCAGAATG GGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAGEST: gi|151398925|gb|EV268796.1|EV268796
genomic: CTTGCTGGTTTTGCTGAGGTAGTGCGCATGGAACAAGAGAAGGCAGAATGgtaagaaatt ... attttactagGGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAG
EST: CTTGCTGGTTTTACTGAGGTAGTGCGCATGGAACAAGAGAAGGCAGAATG GGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAGEST: gi|298189905|gb|HO038308.1|HO038308
genomic: CTTGCTGGTTTTGCTGAGGTAGTGCGCATGGAACAAGAGAAGGCAGAATGgtaagaaatt ... attttactagGGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAG
EST: CTTGCTGGTTTTGCTGAGGTAGTGAGCATGGAACAAGAGAAGGCAGAATG GGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAGEST: gi|151398223|gb|EV268101.1|EV268101
genomic: CTTGCTGGTTTTGCTGAGGTAGTGCGCATGGAACAAGAGAAGGCAGAATGgtaagaaatt ... attttactagGGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAG
EST: CTTGCTGGTTTTGCTGAGGTAGTGCGCATGGAACAAGAGAAGGCAGAATG GGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAG
genomic: CTTGCTGGTTTTGCTGAGGTAGTGCGCATGGAACAAGAGAAGGCAGAATGgtaagaaatt ... attttactagGGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAG
cagtgataaaaatccattacgtattgcttttcatatttatcttacattttactagGGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAGGTATAAAGAGATGATGGAAGCCTACAGGGAGATGTTGACTTACATTAAG
atcttac putative branch site (score: 3)
ttttact CT-rich tract
ttttcatatttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgtagtgcatagtaatagtaatattatgttaaaatcattccacagtgataaaaatccattacgtattgcttttcatatttatcttacattttactagGGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAGGTATAAAGAGATGATGGAAGCCTACAGGGAGATGTTGACTTACATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- -tgtagtg
- - - - - - - - - - - - - - - - - - - cattcca
- - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa