1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttgtattttagttatgatttatgatttagtagattttgccctggaaccttgtaccttattgatatttcttatgctctttggtgttggtatctctgacagGAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGATCAGTTTGTGATTCGTGCTGGTTCAGATACTGAAGTTTTGTGGAACGATGCCAGGCATT
species | Glycine max |
transcript | GLYMA03G00470.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGTGCCTAATGAGTGGGCTCCTCCCGAAACTAAGCCATATGCTCCAGGG GAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGATCAGTTTGTGEST: gi|51337951|gb|CO981817.1|CO981817
genomic: AGGTGCCTAATGAGTGGGCTCCTCCCGAAACTAAGCCATATGCTCCAGGGgtaaggttca ... tctctgacagGAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGATCAGTTTGTG
EST: AGGTGCCTAATGAGTGGGCTCCTCCCGAAACTAAGCCATATGCTCCAGGG GAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGATCAGTTTGTGEST: gi|193673056|gb|FK618918.1|FK618918
genomic: AGGTGCCTAATGAGTGGGCTCCTCCCGAAACTAAGCCATATGCTCCAGGGgtaaggttca ... tctctgacagGAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGATCAGTTTGTG
EST: AGGTGCCTAATGAGTGGGCTCCTCCCGAAACTAAGCCATATGCTCCAGGG GAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGATCAGTTTGTG
genomic: AGGTGCCTAATGAGTGGGCTCCTCCCGAAACTAAGCCATATGCTCCAGGGgtaaggttca ... tctctgacagGAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGATCAGTTTGTG
aaccttgtaccttattgatatttcttatgctctttggtgttggtatctctgacagGAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGATCAGTTTGTGATTCGTGCTGGTTCAGATACTGAAGTTTTGTGGAACGATGCCAGGCATT
tattgat putative branch site (score: 3)
tatctct putative PPT
ttattgatatttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtattttagttatgatttatgatttagtagattttgccctggaaccttgtaccttattgatatttcttatgctctttggtgttggtatctctgacagGAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGATCAGTTTGTGATTCGTGCTGGTTCAGATACTGAAGTTTTGTGGAACGATGCCAGGCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - ttgccct
- - - - - - - - - - - - - - - - - - - - - - - -ccttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgttgg