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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgaagatttttcagtatatctttttttacccccctttcctgagtgtactgtatttcctttgggtgcaatagttaattctaaagcttcatgtttaacagGTTATTGCAAATTTCAGTGCCACATGGTGTGGTCCTTGTAAGATGATTGCACCATATTATTGCGAGTTGTCCGAGAAATACCCATCTATCATGTTCTTAT

Basic information

species Glycine max
transcript GLYMA03G00410.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G00410.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G08710.1 (Arabidopsis thaliana), 3'ss of exon 3
cttgaagatttttcagtatatctttttttacccccctttcctgagtgtactgtatttcctttgggtgcaatagttaattctaaagcttcatgtttaacagGTTATTGCAAATTTCAGTGCCACATGGTGTGGTCCTTGTAAGATGATTGCACCATATTATTGCGAGTTGTCCGAGAAATACCCATCTATCATGTTCTTAT
       |||||||    | | |  | || | |  || || ||   ||  ||| |||  ||      |    | ||||       ||||   |  |||||||  ||||||| |||||||| |||||||||||||| ||||| ||  | ||||||| ||    |||| | || |||||| |  | ||| | |||||| |  
----gtaatttttc--cctttttgatatttctcttctctcatgta-gtgttgtgtttgtttctcaatctcatgctaatatcttctcttctcttgaaacagGTGGTTGCAAACTTCAGTGCGACATGGTGTGGTCCGTGTAAAATTGTGGCACCATTTTTCATCGAGCTCTCAGAGAAACATTCTTCTCTTATGTTCCTTC

upper sequence: GLYMA03G00410.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g00020.t01 (Vitis vinifera), 3'ss of exon 3
--cttgaagattt----ttcagtatatctttttttacccccctttcctgagtgtactgtatttcctttgggtgcaatagttaattctaaagcttcatgtttaacagGTTATTGCAAATTTCAGTGCCACATGGTGTGGTCCTTGTAAGATGATTGCACCATATTATTGCGAGTTGTCCGAGAAATACCCATCTATCATGTTCTTAT
  ||||| || ||    |||| |  |  ||  |||| |             |||||  |||||        | || || ||        |||| ||| ||  |||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||  || |||||  | || |||  | |||| ||| | |||||  || 
tgcttgaggaattgctcttcattgcaatttgatttatctggtgagttcagttgtacaatatttttccaattttcactaatt------ggagctgcatattcgacagGTGATTGCAAATTTTAGTGCAACATGGTGTGGTCCTTGTAAAATGATTGCACCATTCTACTGCGAACTATCTGAGGCACACCCTTCTCTGATGTTTCTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtactgtatttcctttgggtgcaatagttaattctaaagcttcatgtttaacagGTTATTGCAAATTTCAGTGCCACATGGTGTGGTCCTTGTAAGATGATTGCACCATATTATTGCGAGTTGTCCGAGAAATACCCATCTATCATGTTCTTAT
                                ttctaaa  putative branch site (score: 2)
                       aatagttaattctaaa  TA-rich tract